CRAN Package Check Results for Maintainer ‘Theodoros Margelos <ted.margelos02 at gmail.com>’

Last updated on 2025-01-30 16:49:01 CET.

Package	ERROR	OK
ProtE	8	5

Package ProtE

Current CRAN status: ERROR: 8, OK: 5

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘ProtE-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dianno > ### Title: DIA NN proteomics data analysis > ### Aliases: dianno > > ### ** Examples > > #Example of running the function with paths for two groups. > # The file path is a placeholder, replace it with an actual file. > > jittered.pg_matrix.tsv <- system.file("extdata", "report.pg_matrix.tsv", package = "ProtE") > dianno(file = jittered.pg_matrix.tsv, + group_names = c("Healthy","Control"), + samples_per_group = c(5,5), filtering_value = 80) The ProtE process starts now! Error in grid.newpage() : could not open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/ProtE/extdata/ProtE_Analysis/Plots/meanSdPlot.bmp' Calls: dianno Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘ProtE-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dianno > ### Title: DIA NN proteomics data analysis > ### Aliases: dianno > > ### ** Examples > > #Example of running the function with paths for two groups. > # The file path is a placeholder, replace it with an actual file. > > jittered.pg_matrix.tsv <- system.file("extdata", "report.pg_matrix.tsv", package = "ProtE") > dianno(file = jittered.pg_matrix.tsv, + group_names = c("Healthy","Control"), + samples_per_group = c(5,5), filtering_value = 80) The ProtE process starts now! Error in grid.newpage() : could not open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ProtE/extdata/ProtE_Analysis/Plots/meanSdPlot.bmp' Calls: dianno Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘ProtE-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dianno > ### Title: DIA NN proteomics data analysis > ### Aliases: dianno > > ### ** Examples > > #Example of running the function with paths for two groups. > # The file path is a placeholder, replace it with an actual file. > > jittered.pg_matrix.tsv <- system.file("extdata", "report.pg_matrix.tsv", package = "ProtE") > dianno(file = jittered.pg_matrix.tsv, + group_names = c("Healthy","Control"), + samples_per_group = c(5,5), filtering_value = 80) The ProtE process starts now! Error in grid.newpage() : could not open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ProtE/extdata/ProtE_Analysis/Plots/meanSdPlot.bmp' Calls: dianno Execution halted Flavor: r-patched-linux-x86_64

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘ProtE-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dianno > ### Title: DIA NN proteomics data analysis > ### Aliases: dianno > > ### ** Examples > > #Example of running the function with paths for two groups. > # The file path is a placeholder, replace it with an actual file. > > jittered.pg_matrix.tsv <- system.file("extdata", "report.pg_matrix.tsv", package = "ProtE") > dianno(file = jittered.pg_matrix.tsv, + group_names = c("Healthy","Control"), + samples_per_group = c(5,5), filtering_value = 80) The ProtE process starts now! Error in grid.newpage() : could not open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/ProtE/extdata/ProtE_Analysis/Plots/meanSdPlot.bmp' Calls: dianno Execution halted Flavor: r-release-linux-x86_64

Version: 1.0.1
Check: package dependencies
Result: ERROR Package required but not available: ‘UniProt.ws’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64