CRAN Package Check Results for Maintainer ‘Tim Barnett <timothy.barnett at roche.com>’

Last updated on 2025-01-30 16:49:01 CET.

Package	ERROR	OK
datacutr	5	8

Package datacutr

Current CRAN status: ERROR: 5, OK: 8

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/14s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(datacutr) > > test_check("datacutr") [1] "At least 1 patient with missing datacut date." [1] "At least 1 patient with missing datacut date, all records will be kept." [1] "At least 1 patient with missing datacut date, all records will be kept." [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-process_cut.R:180:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:180:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-process_cut.R:227:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:227:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-read_out.R:81:3'): Correct .Rmd file is run successfully when fields contain correct data inputs ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(...) at test-read_out.R:81:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") ── Error ('test-read_out.R:99:3'): Correct .Rmd file is ran successfully when fields are empty ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(out_path = temp_dir) at test-read_out.R:99:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [7s/8s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(datacutr) > > test_check("datacutr") [1] "At least 1 patient with missing datacut date." [1] "At least 1 patient with missing datacut date, all records will be kept." [1] "At least 1 patient with missing datacut date, all records will be kept." [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-process_cut.R:180:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:180:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-process_cut.R:227:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:227:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-read_out.R:81:3'): Correct .Rmd file is run successfully when fields contain correct data inputs ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(...) at test-read_out.R:81:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") ── Error ('test-read_out.R:99:3'): Correct .Rmd file is ran successfully when fields are empty ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(out_path = temp_dir) at test-read_out.R:99:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/12s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(datacutr) > > test_check("datacutr") [1] "At least 1 patient with missing datacut date." [1] "At least 1 patient with missing datacut date, all records will be kept." [1] "At least 1 patient with missing datacut date, all records will be kept." [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-process_cut.R:180:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:180:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-process_cut.R:227:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:227:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-read_out.R:81:3'): Correct .Rmd file is run successfully when fields contain correct data inputs ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(...) at test-read_out.R:81:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") ── Error ('test-read_out.R:99:3'): Correct .Rmd file is ran successfully when fields are empty ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(out_path = temp_dir) at test-read_out.R:99:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(datacutr) > > test_check("datacutr") [1] "At least 1 patient with missing datacut date." [1] "At least 1 patient with missing datacut date, all records will be kept." [1] "At least 1 patient with missing datacut date, all records will be kept." [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-process_cut.R:180:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:180:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-process_cut.R:227:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:227:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 5. └─xfun::write_utf8(res, output) 6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 7. └─base::file(con, "w") ── Error ('test-read_out.R:81:3'): Correct .Rmd file is run successfully when fields contain correct data inputs ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(...) at test-read_out.R:81:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") ── Error ('test-read_out.R:99:3'): Correct .Rmd file is ran successfully when fields are empty ── Error in `file(con, "w")`: cannot open the connection Backtrace: ▆ 1. └─datacutr::read_out(out_path = temp_dir) at test-read_out.R:99:3 2. └─rmarkdown::render(...) 3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 4. └─xfun::write_utf8(res, output) 5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE) 6. └─base::file(con, "w") [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 0.2.2
Check: tests
Result: ERROR Running ‘testthat.R’ [5s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(datacutr) > > test_check("datacutr") [1] "At least 1 patient with missing datacut date." [1] "At least 1 patient with missing datacut date, all records will be kept." [1] "At least 1 patient with missing datacut date, all records will be kept." [ FAIL 4 | WARN 0 | SKIP 0 | PASS 55 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-process_cut.R:180:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available). Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:180:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE) 5. └─rmarkdown:::stop2(paste(msg, collapse = " ")) ── Error ('test-process_cut.R:227:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ── Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available). Backtrace: ▆ 1. └─datacutr::process_cut(...) at test-process_cut.R:227:3 2. └─datacutr::read_out(...) 3. └─rmarkdown::render(...) 4. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE) 5. └─rmarkdown:::stop2(paste(msg, collapse = " ")) ── Error ('test-read_out.R:81:3'): Correct .Rmd file is run successfully when fields contain correct data inputs ── Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available). Backtrace: ▆ 1. └─datacutr::read_out(...) at test-read_out.R:81:3 2. └─rmarkdown::render(...) 3. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE) 4. └─rmarkdown:::stop2(paste(msg, collapse = " ")) ── Error ('test-read_out.R:99:3'): Correct .Rmd file is ran successfully when fields are empty ── Error: pandoc version 1.12.3 or higher is required and was not found (see the help page ?rmarkdown::pandoc_available). Backtrace: ▆ 1. └─datacutr::read_out(out_path = temp_dir) at test-read_out.R:99:3 2. └─rmarkdown::render(...) 3. └─rmarkdown::pandoc_available(required_pandoc, error = TRUE) 4. └─rmarkdown:::stop2(paste(msg, collapse = " ")) [ FAIL 4 | WARN 0 | SKIP 0 | PASS 55 ] Error: Test failures Execution halted Flavor: r-oldrel-macos-x86_64