CRAN Package Check Results for Maintainer ‘Wanjun Gu <wanjun.gu at ucsf.edu>’

Last updated on 2025-02-16 08:51:43 CET.

Package	ERROR	NOTE	OK
ggmugs	1	6	8
gptr			15

Package ggmugs

Current CRAN status: ERROR: 1, NOTE: 6, OK: 8

Version: 0.6.0
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘ggmugs.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64, r-devel-windows-x86_64

Version: 0.6.0
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [62s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ggmugs) > > test_check("ggmugs") Loading study1... [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-ggmugs.R:2:3'): ggmugs works ─────────────────────────────────── <purrr_error_indexed/rlang_error/error/condition> Error in `purrr::map(input_files, function(x) { message(paste0("Loading ", x[["study_name"]], "...\n")) d = data.table::fread(x[["summary_stat"]]) d[["study_name"]] = x[["study_name"]] d[["chr_pos"]] = paste0(d[["chr"]], "_", d[["pos"]]) d[["logp"]] = -log(d[["p"]], 10) d = dplyr::arrange(d, chr, pos, dplyr::desc(logp)) d = dplyr::distinct(d, chr_pos, .keep_all = TRUE) d = dplyr::select(d, chr, pos, chr_pos, logp, study_name) return(d) })`: i In index: 1. i With name: study1. Caused by error in `download.file()`: ! download from 'https://raw.githubusercontent.com/Broccolito/ggmugs_data/main/sumstat1.txt' failed Backtrace: ▆ 1. ├─ggmugs::ggmugs(...) at test-ggmugs.R:2:3 2. │ └─purrr::map(...) 3. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 4. │ ├─purrr:::with_indexed_errors(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ ├─purrr:::call_with_cleanup(...) 7. │ └─ggmugs (local) .f(.x[[i]], ...) 8. │ └─data.table::fread(x[["summary_stat"]]) 9. │ └─utils::download.file(...) 10. └─base::.handleSimpleError(...) 11. └─purrr (local) h(simpleError(msg, call)) 12. └─cli::cli_abort(...) 13. └─rlang::abort(...) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64

Package gptr

Current CRAN status: OK: 15