Multi-omic (or any multi-view) spectral clustering methods often assume the same number of clusters across all datasets. We supply methods for multi-omic spectral clustering when the number of distinct clusters differs among the omics profiles (views).

Provides functions for measuring
    population divergence from genotypic data.

Perform multivariate modeling of evolved traits, with special attention to
 understanding the interplay of the multi-factorial determinants of their origins
 in complex ecological settings (Stephens, 2007 <doi:10.1016/j.tree.2006.12.003>).
 This software primarily concentrates on phylogenetic regression analysis, enabling
 implementation of tree transformation averaging and visualization functionality.
 Functions additionally support information theoretic approaches
 (Grueber, 2011 <doi:10.1111/j.1420-9101.2010.02210.x>;
 Garamszegi, 2011 <doi:10.1007/s00265-010-1028-7>)
 such as  model averaging and selection of phylogenetic models.
 Accessory functions are also implemented for coef standardization (Cade 2015), 
 selection uncertainty, and variable importance (Burnham & Anderson 2000).
 There are other numerous functions for visualizing confounded variables,
 plotting phylogenetic trees, as well as reporting and exporting modeling results.
 Lastly, as challenges to ecology are inherently multifarious, and therefore often
 multi-dataset, this package features several functions to support the identification,
 interpolation, merging, and updating of missing data and outdated nomenclature.

To determine the number of quantitative assays needed for a sample 
    of data using pooled testing methods, which include mini-pooling (MP), MP 
    with algorithm (MPA), and marker-assisted MPA (mMPA). To estimate the number 
    of assays needed, the package also provides a tool to conduct Monte Carlo (MC) 
    to simulate different orders in which the sample would be collected to form pools. 
    Using MC avoids the dependence of the estimated number of assays on any specific 
    ordering of the samples to form pools.