Imports: stats (>= 3.5.2), graphics (>= 3.5.2)

Depends: R(>= 3.0.0)
Imports: graphics, openssl, kmer (>= 1.0.0), Rcpp (>= 0.12.5), stats
LinkingTo: Rcpp
Suggests: ape (>= 4.0), knitr, qpdf, rmarkdown, testthat

Depends: R (>= 3.5.0), ape (>= 5.0)
Imports: Rcpp (>= 0.12.1), Matrix, methods, coda, fmcmc, utils, MASS,
xml2
LinkingTo: Rcpp
Suggests: covr, knitr, tinytest, AUC, rmarkdown,

Depends: R (>= 3.5.0)
Suggests: testthat (>= 3.0.0), ggplot2, knitr, rmarkdown, vdiffr

Depends: R (>= 3.5.0), shinyBS
Imports: cowplot, data.table, doParallel, dplyr, DT, foreach, ggplot2,
gridExtra, htmltools, methods, plotly, rlang, shiny,
shinythemes

Imports: shiny, golem, config, attempt, glue, htmltools, shinymaterial,
shinyjs, rhandsontable, rmarkdown, ggraph, igraph

Depends: R (>= 3.1.1)
Suggests: knitr, MASS, vcdExtra, nnet, survival, pROC

Imports: ggfun (>= 0.1.3), ggplot2, ggplotify, patchwork, magrittr,
methods, utils

Depends: R (>= 4.1.0)
Imports: aplot (>= 0.1.10), dplyr, forcats, ggfun (>= 0.1.1), ggplot2,
grid, maftools, purrr, rlang, tibble, tidyr, utils, ggstar,
yulab.utils (>= 0.0.8)
Suggests: ggtree, data.table, RColorBrewer, R.utils

Depends: R (>= 3.0.0)
Suggests: tkrplot, jpeg, png, splines, utils, tcltk

Depends: R (>= 4.00)
Imports: dplyr, tidyr, purrr, this.path, flextable, officer,
tidyselect, utils, arsenal
Suggests: rmarkdown, knitr, testthat, tibble

Imports: Rcpp (>= 1.0.0), maxLik, mnormt, mvtnorm, graphics,
randtoolbox, numDeriv, parallel, Deriv, matrixStats, RSGHB,
coda, tibble, stringr, bgw (>= 0.1.3), cli, Rsolnp

Imports: abind, colorsGen, graphics, grDevices, gyro (>= 1.3.0),
plotrix, Polychrome, Rcpp, stats
LinkingTo: BH, Rcpp, RcppCGAL, RcppEigen

Depends: R (>= 4.0)
Imports: httr, keyring, memoise, getPass, R6, sf, jsonlite, geojsonio,
rstudioapi
Suggests: rmarkdown, covr, testthat, terra, ncdf4, knitr, rlang, dplyr,
ggplot2, patchwork

Suggests: testthat (>= 3.0.0), curl, covr, knitr, rmarkdown

Depends: ggplot2, R (>= 3.6)
Imports: dplyr, glue, hardhat (>= 1.3.1), Matrix, proxyC, purrr, rlang,
stats, tibble, tidyr, tidyselect, utils
Suggests: covr, isotree (>= 0.6.1-1), knitr, modeldata, recipes (>=
1.0.10), rmarkdown, spelling, testthat (>= 3.0.0), xml2