Imports: MASS, Matrix, rTensor, Tlasso, glasso, doParallel,expm

Imports: rootSolve, truncSP, survival, SQUAREM, methods
Suggests: MASS, boot

Suggests: dplyr, ggplot2, cli, testthat, knitr, DescTools, outliers,
rmarkdown, mFilter, covr

Imports: cli, purrr, rlang, sys, tools, withr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), terra, shapefiles, sf,
elevatr, fs

Imports: data.table, httr, jsonlite, RProtoBuf

Imports: DEoptim, ggplot2, ggpubr, graphics, MASS, rootSolve, Runuran,
stats, squash, TSA

Suggests: ggplot2, testthat (>= 3.0.0), tibble

Depends: R (>= 4.2)
Imports: checkmate, dplyr, stringr, utils, stats, Andromeda, tidyr, R6,
sunburstR, networkD3, htmlwidgets, shiny, shinydashboard
Suggests: knitr, rmarkdown, tibble, testthat (>= 3.0.0), usethis,
Eunomia, CDMConnector, DatabaseConnector (>= 6.0.0), SqlRender,
CohortGenerator, webshot2, CirceR, duckdb, DBI, withr, plotly,
ggplot2, Capr

Depends: R (>= 4.0.0), ape, dispRity, stats
Imports: graphics, MASS, methods, utils, rgl,
Suggests: testthat, knitr

Depends: R (>= 3.6.0), grDevices, graphics, stats
Suggests: MASS

Suggests: MASS, randomForest, ranger, testthat (>= 2.1.0), knitr,
rmarkdown, covr

Imports: XML, RCurl, methods, utils, httr

Depends: R (>= 4.0.0)
Imports: Rcpp (>= 0.12.6), runjags, stats, graphics, utils, grDevices,
coda, parallel, rjags, MASS, hypergeo, logspline
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat, R.rsp

Suggests: adaptiveGPCA (>= 0.1), knitr (>= 1.16), testthat (>= 2.0.0),
markdown, rmarkdown

Imports: lazyeval, ape, geiger, utils, data.table

Depends: graphics, grDevices, stats, utils, lubridate, ggplot2

Imports: adjclust, BiocGenerics, csaw, data.table, dplyr,
InteractionSet, limma, methods, stats, SummarizedExperiment,
reshape2, testthat, rlang, HiCDOC, purrr

Imports: fitdistrplus, igraph, nFactors, Rcpp (>= 1.0.2), RColorBrewer,
Rdpack

Depends: R (>= 3.4.0), stats,
Imports: ape (>= 5.0), cli (>= 3.0), colorspace, memoise, phangorn (>=
2.2.1), Rdpack (>= 0.7), shiny, shinyjs, TreeTools (>= 1.7.2),
LinkingTo: Rcpp, TreeTools,
Suggests: bookdown, cluster, ggplot2, hypervolume, kdensity, knitr,
MASS, parallel, plotly, PlotTools, protoclust, Quartet, readxl,
rmarkdown, Rcpp (>= 1.0.8), rgl, Rogue, spelling, testthat (>=
3.0), Ternary (>= 1.1.2), TreeDistData (> 0.1.0), TreeSearch
(>= 1.4.0), Umatrix, uwot, vdiffr (>= 1.0.0),