Depends: R (>= 2.15.1), MASS, Matrix, mvtnorm, sandwich
Imports: lpSolve, Hmisc, lme4 (>= 1.0), stats, graphics, grDevices,
utils, boot
Suggests: mgcv, quantreg, VGAM, SuppDists, survival, parallel,
testthat, speedglm

Suggests: knitr, rmarkdown, markdown, learnr

Suggests: testthat, knitr, ggplot2, gridExtra

Depends: R (>= 2.10)
Suggests: knitr, rmarkdown, dplyr, ggplot2, maps, magrittr, testthat

Depends: R (>= 2.10)
Suggests: testthat, covr, knitr, rmarkdown, spelling

Depends: R (>= 3.5.0)
Suggests: rmarkdown, knitr, ggplot2, tidyr, dplyr, magrittr, tm,
patchwork, wordcloud2

Imports: HDMT, locfdr, qqman, qvalue, fdrtool

Depends: R (>= 4.0.0)
Imports: cluster, matrixStats (>= 1.0.0), nnet (>= 7.3-0), seriation,
stringdist, TraMineR (>= 1.6), WeightedCluster
Suggests: knitr, rmarkdown, viridisLite (>= 0.4.0)

Imports: survival , dplyr , tidyr , ggplot2 , mvtnorm , matrixcalc

Depends: R (>= 3.2.0), methods, Matrix (>= 1.4-2)
Suggests: mefa

Depends: R (>= 3.5.0), SKAT, pedgene, gdsfmt
Imports: AnnotationDbi, DBI, GenomeInfoDb, RSQLite, methods, famSKATRC,
kinship2
LinkingTo: Rcpp
Suggests: knitr, rmarkdown, formatR, TxDb.Hsapiens.UCSC.hg19.knownGene,
org.Hs.eg.db

Depends: R (>= 4.1.0)
Imports: checkmate, graphics, methods, Rcpp, stats, utils
LinkingTo: BH, dqrng, Rcpp, RcppEigen
Suggests: car, carData, covr, dplyr, ggplot2, ggridges, knitr, MASS,
microbenchmark, multcomp, rmarkdown, spelling, testthat (>=
3.0.0), withr

Depends: R (>= 2.10)
Imports: cli, methods, R6, rlang, tibble
LinkingTo: cpp11
Suggests: clipr, covr, crayon, curl, readr, testthat (>= 3.0.0), withr

Imports: utils, ggplot2, plyr, dplyr, reticulate, Rcpp, shiny, shinyjs,
tidyr, leaflet, tibble, methods

Imports: sm, boot, RColorBrewer, mclust, ggplot2, tidyr, dplyr, purrr,
RcppRoll, EnvStats, methods

Depends: R (>= 3.4.0)
Imports: shiny, shinydashboard, shinyWidgets, shinyBS, shinyjs,
RColorBrewer, tidyr, dplyr, stringr, stringi, DT, formattable,
ggplot2, plotly, mem (>= 2.18)
Suggests: openxlsx, readxl, foreign, haven, readODS, RODBC, magick