Imports: Matrix, R.matlab, protoclust, igraph, gam

Imports: methods, stats, graphics, Matrix, splines

Depends: R (>= 3.5.0)
Imports: stats, nlme, utils, methods, graphics, car, knitr, kableExtra,
readxl, mblm, magrittr
Suggests: testthat (>= 3.0.0), shiny, yaml, scplot

Depends: R(>= 4.0.0)
Imports: glmnet, stats, Seurat (>= 5.0.1), harmony, SeuratObject
Suggests: knitr, testthat (>= 3.0.0), rmarkdown

Depends: R (>= 3.4)
Imports: dplyr, ismev, magrittr, plyr, Rcpp, stats, sets, tibble, tidyr
LinkingTo: Rcpp, RcppArmadillo
Suggests: purrr, doParallel, foreach, ggplot2, knitr, MASS, pscl,
reshape2, rmarkdown, sp, testthat, gamlss.dist

Imports: stats, utils, coda, Hmisc, lattice
Suggests: gdata

Depends: R (>= 3.5.0)
Imports: magrittr, xml2, stringr, dplyr, Seurat, SeuratObject, VAM,
utils
Suggests: knitr, pheatmap, rmarkdown, usethis

Suggests: gifski, knitr, leafem, leaflet, leafpop, mapview, raster,
spelling, rmarkdown, testthat (>= 3.0.0)

Imports: ActivePathways, AdaptGauss, coop, igraph, mixtools,
reticulate, methods

Depends: neldermead (>= 1.0-8), optimsimplex (>= 1.0-5), optimbase (>=
1.0-8)
Imports: lattice, grid, deSolve, utils
Suggests: knitr (>= 1.28),rmarkdown (>= 2.2)

Depends: R (>= 3.2)
Imports: jmvcore (>= 0.8.0), R6, ggplot2, cowplot, ggstance, ggridges

Suggests: DataVisualizations, ggplot2, ggExtra, plotly, FCPS,
parallelDist, secr, ClusterR

Imports: ggplot2, scales, grid, grDevices, graphics
Suggests: covr, knitr, rmarkdown, testthat

Depends: R (>= 4.1.0), ggplot2
Imports: ggforce, rlang, ggfun, stats, tidyr, dplyr, utils
Suggests: knitr, rmarkdown, prettydoc, maps, scales, cli

Depends: R (>= 2.10)
Imports: sp, foreach, parallel, doSNOW, raster, fields, LiblineaR,
limma

Depends: R (>= 4.0.0)
Imports: Matrix, methods, progress, stats, reshape2
Suggests: rmarkdown, knitr, testthat, prettydoc

Imports: Seurat, dplyr, plyr, scales, HGNChelper, openxlsx

Depends: R (>= 3.5.0)
Imports: dplyr, ggplot2, ggrepel, graphics, grDevices, igraph, irlba,
magrittr, Matrix, methods, parallel, pbmcapply, pROC, Rcpp,
rlang, scales, stats, tibble, utils, uwot, withr
LinkingTo: Rcpp, RcppArmadillo, RcppProgress, RcppEigen
Suggests: ggrastr (>= 0.1.7), jsonlite, rmumps, testthat