Imports: magrittr, ggplot2, dplyr, bupaR, edeaR, shiny, miniUI

Depends: R (>= 2.10)
Imports: bupaR, edeaR, dplyr, forcats, magrittr, reticulate, tidyr,
tidyselect, purrr, stringr, keras, tensorflow, rlang,
data.table, mltools, ggplot2, cli, glue, plotly, progress
Suggests: knitr, rmarkdown, lubridate, eventdataR

Suggests: callr (>= 3.7.3), cli (>= 3.3.0), codetools, covr, curl,
debugme, parallel, rlang (>= 1.0.2), testthat (>= 3.0.0),
webfakes, withr

Depends: R (>= 3.1.0)
Imports: MASS, permute, Matrix, stats, foreach, Rdpack
Suggests: knitr, rmarkdown, roxygen2, vegan, testthat, ade4, doParallel

Depends: R (>= 3.6.0), common
Imports: utils, fmtr, reporter, stats, tibble, sasLM (>= 0.9.9)
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), covr, logr

Depends: R (>= 2.10), dplyr, parallel, Matrix, methods

Imports: fs, rmarkdown, rprojroot, withr, rlang, cli, whisker

Imports: Rcpp (>= 0.11.5), stats, data.table, grDevices, graphics,
diagram, survival, KernSmooth, lava

Depends: R (>= 2.15.3)
Imports: lpSolveAPI, doParallel, foreach, iterators, methods

Depends: R (>= 4.0.0), gtools
Imports: Rcpp (>= 1.0.10), furrr, future, ggplot2, AnnotationDbi,
DR.SC, Matrix, mclust, PRECAST, pbapply, biomaRt, irlba,
org.Hs.eg.db, org.Mm.eg.db, Seurat, parallel, harmony, methods,
stats, utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, performance, nnet, scater, ggrepel, RANN,
grDevices

Depends: R (>= 2.10), DiceKriging, KrigInv, pGPx
Imports: microbenchmark, quantreg, lhs, splines, methods, RColorBrewer,
utils, MASS, rcdd

Imports: methods, rlang, tibble (>= 3.0.0), vctrs, withr
Suggests: covr, dm, DiagrammeR, DiagrammeRsvg, RProtoBuf, testthat

Depends: ggplot2, RColorBrewer, reshape, lavaan, R (>= 3.0.0)

Imports: ggplot2 (>= 3.2.0)
Suggests: tidyverse, qpdf, scales, purrr, forcats, dplyr, knitr,
rmarkdown, ggalluvial, ggrepel, testthat (>= 3.0.0)

Depends: R (>= 4.3.0)
Imports: Rcpp (>= 1.0.5), Matrix, abind, methods, lifecycle, generics,
tibble, ggplot2
LinkingTo: Rcpp, RcppArmadillo (>= 0.10.7.5.0), RcppProgress, splines2
(>= 0.4.4), rcpptimer (>= 1.1.0)
Suggests: testthat (>= 3.0.0), gamlss.dist, knitr, rmarkdown, dplyr