Imports: ggplot2, igraph, patchwork, pracma
Suggests: Seurat, gridExtra, knitr, plotly, qpdf, rmarkdown, testthat

Depends: R (>= 3.5.0)
Imports: ggparty, ggplot2, partykit, dplyr, ggnewscale, gtable, stats,
tidyr, cluster, grid, yardstick, seriation
Suggests: forcats, knitr, rmarkdown, rpart, testthat

Imports: colorspace, data.table (>= 1.8.8), ggplot2, grid, gridBase,
igraph, methods, RColorBrewer, shiny (>= 0.12.0)

Suggests: knitr, rmarkdown, testthat, vdiffr, spelling

Depends: R (>= 2.10)
Imports: data.table, future, future.apply, cli (>= 3.6.1)
Suggests: testthat (>= 3.0.0), tidyr (>= 1.3.0), comorbidity (>= 1.0.7)

Suggests: checkmate, pkgload, plotrix, rmarkdown, rprojroot, RUnit,
testthat, tinytest

Depends: R (>= 3.5.0)
Imports: ape (>= 5.6), cli (>= 3.0), cluster, fastmatch (>= 1.1.3), fs,
future, PlotTools, promises, protoclust, Rcpp, Rdpack (>= 0.7),
Rogue (> 2.0.0), shiny (>= 1.6.0), shinyjs, stats, TreeDist (>=
2.6.3), TreeTools (>= 1.10.0),
LinkingTo: Rcpp, TreeTools,
Suggests: knitr, phangorn (>= 2.2.1), Quartet, readxl, rmarkdown,
shinytest, spelling, testthat, vdiffr (>= 1.0.0),

Suggests: gbm, jsonlite, lightgbm, randomForest, ranger, scales,
survival, testthat, xgboost

Suggests: devtools, ggpubr (>= 0.6.0), knitr, rmarkdown, testthat (>=
3.0.0)

Depends: R (>= 3.4.0), ape, ade4
Imports: adegenet, adegraphics, combinat, compiler, distory, fields,
htmlwidgets, MASS, methods, parallel, phangorn, phytools, Rcpp,
rgl, RLumShiny, scatterD3, shiny, shinyBS, utils
LinkingTo: Rcpp
Suggests: ggplot2, igraph, knitr, pander, RColorBrewer, reshape2,
rmarkdown, sf, testthat

Suggests: phyloTop, testthat, DDD, geiger, nodeSub, nLTT, castor,
adephylo, ggplot2, tibble, picante, treebalance, RPANDA, lintr,
rmarkdown, knitr

Depends: R (>= 3.4.0), ape (>= 5.6),
Imports: bit64, lifecycle, colorspace, fastmatch (>= 1.1.3), methods,
PlotTools, RCurl, R.cache, Rdpack (>= 2.3),
LinkingTo: Rcpp
Suggests: spelling, knitr, phangorn (>= 2.2.1), purrr, Rcpp (>= 1.0.8),
rlang, rmarkdown, testthat (>= 3.0), vdiffr (>= 1.0.0),