Also abbreviates to "CCSeq". Finds clusters of colocalized sequences in .bed annotation files
    up to a specified cut-off distance. Two sequences are colocalized if they
    are within the cut-off distance of each other, and clusters are sets of
    sequences where each sequence is colocalized to at least one other sequence
    in the cluster. For a set of .bed annotation tables provided in a list 
    along with a cut-off distance, the program will output a file containing
    the locations of each cluster. Annotated .bed files are from 
    the 'pwmscan' application at <https://ccg.epfl.ch/pwmtools/pwmscan.php>. 
    Personal machines might crash or take excessively long depending 
    on the number of annotated sequences in each file and whether chromsearch() 
    or gensearch() is used.

Automate the co-localization analysis of fluorescence microscopy 
  images. Selecting regions of interest, extract pixel intensities from 
  the image channels and calculate different co-localization statistics. The
  methods implemented in this package are based on Dunn et al. (2011) 
  <doi:10.1152/ajpcell.00462.2010>.

Compare color palettes with simulations of color vision deficiencies - deuteranopia, protanopia, and tritanopia.
        It includes calculation of distances between colors, and creating summaries of differences between a color palette and simulations of color vision deficiencies.
        This work was inspired by the blog post at <http://www.vis4.net/blog/2018/02/automate-colorblind-checking/>.

Provide the safe color set for color blindness, 
         the simulator of protanopia, deuteranopia.
         The color sets are collected from:
         Wong, B. (2011) <doi:10.1038/nmeth.1618>, and
         <http://mkweb.bcgsc.ca/biovis2012/>.
         The simulations of the appearance of the colors to color-deficient
         viewers were based on algorithms in
         Vienot, F., Brettel, H. and Mollon, J.D. (1999) 
         <doi:10.1002/(SICI)1520-6378(199908)24:4%3C243::AID-COL5%3E3.0.CO;2-3>.
         The cvdPlot() function to generate 'ggplot' grobs of simulations 
         were modified from <https://github.com/clauswilke/colorblindr>.