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ARUtools 0.7.1

Bugs

• clip_wave() was failing due to error in rlang evaulation in nse_names(). (#44)

ARUtools 0.7.0

New

• clean_metadata() now can detect time zone offsets in filenames and return a new column tz_offset (#27).
  • create_pattern_tz_offset() creates the pattern to look for the offset.
• Look around patterns added to create_pattern_XX functions (#6)
  • new function create_lookaround() helps create these patterns.
• Add internal environment for global variables and get_pattern(), add_pattern_aru_type(), and set_pattern() were added as helper functions.
• ARU type detection is improved and now includes manufacturer and type. New function guess_ARU_type() can be called on a path to guess the ARU type.

Update

• “job” package removed from clip_wav() ( #25 )
• Updates to clean_logs() (#28, #34)

Bugs

• Fix issue with no oversamples (GRTS fails from select_samples() if n is a data frame and all n_os are zero. #40)
• Fix to_lower() in check_names() causes error if upper cases used. #41

ARUtools 0.6.2

• Initial CRAN submission.

1st CRAN version! 🥳 Changes since 0.6.1 relate to getting package ready for CRAN submission and so included improved documentation, final coverage of tests, removing unnecessary functions.

• #36 tracks workflow to submission
• Removed play_random_track() (dd3ddb195fe50c37cb83a15110651c4c659014dd) #38
• Added examples to final functions and remove where necessary (44879bd3508af743049f0c5528d386d9f56a8475)

ARUtools 0.6.0

New

• Cleaned up functions for recording selection, spectrograms, clipping waves, acoustic indices and creating dirs (#8, #11, #12, #13, #23)
• Added NSE for relevant functions, these now use col_COLNAME, changed arguments for non-NSE functions to name_COLNAME (#15)
• Ensure that data order is unchanged when passing through cleaning functions (#19)
• Added sampling vignette

Bugs

• Fixed bug calc_sun() corrupting date column (#18)

ARUtools 0.5.1

New

• add_wildtrax() - New helper function to create and append WildTrax file names

Bugs

• clean_gps() - Fixed errors when processing only GPX files

ARUtools 0.5.0

• clean_gps()

  • can handle GPX files via sf now
  • distance cutoff results in a warning (not an error), returning the data with the max_dist column, so users can see which site was problematic.
  • now checks for distance by site groups aru_id and site_id by default
  • pattern matches for GPS column headers have been expanded
  • catches errors but continues reporting on failed loading (remove skip_bad argument)
  • check_problems() now also checks GPS meta data

• create_pattern_XXX()

  • Now accept multiple options
  • all separators are non-optional, but provide "" as pseudo-optional
  • create_pattern_site_id() ids do not have to have a suffix

• clean_metadata() accepts multiple pattern options

• clean_site_index() allows no date columns (col_date_time = NULL)

• add_sites()

  • Rename dt_type to by_date
  • Take mean of multiple sites with by_date = "date" (instead of truncating)
  • Use by_date = NULL to skip joining by date range

• Workflow now works with sf input (must be POINT geometries)

  • clean_site_index()
  • add_sites()
  • calc_sun()

• Timezones are now more explicit

  • Expect local time marked with UTC
  • Existing non-UTC timezones are stripped with a message
  • Errors returned if there are more than one relevant date_time column with different timezones

• Vignettes

  • Mini spatial workflow (vignettes/spatial.Rmd)
  • Explaining timezones (vignettes/timezones.Rmd)

ARUtools 0.4.0.9000

• Major overhaul of first half of the workflow
• Main functions now
• clean_metadata()
• clean_gps() / clean_site_index()
• add_sites()
• calc_sun()
• Helper functions for checking, and for creating regex patterns

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.