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To cite package 'AlleleRetain' in publications use:

Weiser EL (2018). AlleleRetain: a stochastic model for simulating allele retention, demography, and inbreeding accumulation in bottlenecked populations. R package version 2.0.2.

Corresponding BibTeX entry: 

  @Manual{,
    title = {AlleleRetain: a stochastic model for simulating allele
      retention, demography, and inbreeding accumulation in
      bottlenecked populations},
    author = {Emily L. Weiser},
    year = {2018},
    note = {R package version 2.0.2},
  }

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.