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BDgraph NEWS

BDgraph Version 2.73

• Function mse() is added to the package.

BDgraph Version 2.72

• Function predict.bdgraph() is added to the package.

• Function posterior.predict() is added to the package.

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.dw(), option g.prior is changed from 0.5 to 0.2.

BDgraph Version 2.71

• Function auc() is added to the package.

• In function plotroc(), option calibrate is added.

• Data set churn is removed.

BDgraph Version 2.70

• Bug fixed for plotroc() function.

• In function plotroc(), options color, typeline, size, xlab, and ylab, and some more options are added.

BDgraph Version 2.69

• In function bdgraph.sim(), options type="t" and type="alternative-t" are added.

• In function bdgraph.sim(), option nu is added for the cases type="t" and type="alternative-t".

• Bug fixed for compare() function.

• In function compare(), option est is replaced.

• In function plotroc(), option est is replaced.

BDgraph Version 2.68

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.dw(), option verbose is added.

• In function plotcoda(), option verbose is added.

• A new file is added to the vignette of package.

• Bug fixed for bdgraph() function with option method = gcgm and algorithm = rj-dmh.

BDgraph Version 2.65

• Function bdgraph.dw() is added to the package.

• Function bdw.reg() is added to the package.

• In functions graph.sim() and bdgraph.sim(), option graph = "smallworld" is added.

• In functions plot.graph() and plot.bdgraph(), options layout, vertex.size, vertex.color, and vertex.label.dist are added.

• In function bdgraph.sim(), options range.mu and range.dispersion are added.

BDgraph Version 2.64

• Function roc() is added to the package.

• Function conf.mat() is added to the package.

• Function conf.mat.plot() is added to the package.

• Function sparsity() is added to the package.

• Functions ddweibull(), pdweibull(), qdweibull(), rdweibull() are added to the package.

BDgraph Version 2.63

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.ts(), option print is removed.

• In function bdgraph.sim(), option type="dw" is added.

• In function bdgraph.sim(), option type="discrete" is changed to type="count".

• Bug fixed for gnorm() function.

• README is added to the package.

BDgraph Version 2.62

• Bug fixed related to the class function; class(.) == *

BDgraph Version 2.61

• Bug fixed related to the C stack by Fortran functions.
• Function bf() is added to the package.
• Function adj2link() is added to the package.
• Function link2adj() is added to the package.
• Function bdgraph.ts() is removed.

BDgraph Version 2.60

• Function precision() is added to the package.
• Function covariance() is added to the package.

BDgraph Version 2.58

• Bug fixed for compare() function.

• Function get_graph() is added to the package and used inside function compare().

• Functions get_g_prior(), get_g_start(), get_S_n_p(), get_K_start(), and get_cores() are added to the package and used inside function bdgraph().

BDgraph Version 2.57

• In function compare(), option est4 is added.

BDgraph Version 2.56

• In functions rgwish(), rgcwish() and gnorm(), option adj.g is changed to adj.

• In function compare(), option sim.obj is changed to target.

• In function compare(), option bdgraph.obj is changed to est.

• In function compare(), option bdgraph.obj2 is changed to est2.

• In function compare(), option bdgraph.obj3 is changed to est3.

• In function plotroc(), option sim.obj is changed to target.

• In function plotroc(), option bdgraph.obj is changed to est.

• In function plotroc(), option bdgraph.obj2 is changed to est2.

• In function plotroc(), option bdgraph.obj3 is changed to est3.

• In function plotroc(), option bdgraph.obj4 is changed to est4.

• Bug fixed for bdgraph() function with option method = gcgm.

• Functions summary.bdgraph, plot.bdgraph, and print.bdgraph are modified.

BDgraph Version 2.53

• Files configure and configure.ac are removed and files Makevars and Makevars.win are modified accordingly.

• In functions bdgraph(), bdgraph.mpl(), and bdgraph.ts(), option save.all is changed to save.

• In functions bdgraph() and bdgraph.mpl(), option multi.update is changed to jump.

• In functions bdgraph() and bdgraph.ts(), option prior.df is changed to df.prior.

• In function pgraph(), option adj_g is changed to adj.

BDgraph Version 2.52

• Option threshold is added to function rgwish().

• Option threshold is added to function bdgraph().

• Option not.cont is added to function bdgraph().

• In function compare(), option colnames is changed to main.

• In functions bdgraph() and bdgraph.mpl(), option g.space is removed. Instead user can use option g.prior.

• Bug fixed for bdgraph.ts() function.

• Data set churn is added.

BDgraph Version 2.51

• Bug fixed In functions rgwish() and rcgwish().
• vignette is added to the package.

BDgraph Version 2.47

• Function graph.sim is added to the package.
• Function plot.graph is added to the package.

BDgraph Version 2.46

• Function rmvnorm is added to the package.

BDgraph Version 2.44

• Functions bdgraph.ts, rcwish, and rcgwish are added to the package.

BDgraph Version 2.42

• Function local_rates_ggm_mpl in cpp is added for bdgraph.mpl function.
• configure and configure.ac are added to the package for Makevars file.
• Functions bdgraph.ts, rcwish, and rcgwish are removed from the package.

BDgraph Version 2.41

• Option dgm-binary is added to function bdgraph() which is for running Hill-Climbing algorihtm for binary data.
• configure and configure.ac are added to configure checks of C++ codes.

BDgraph Version 2.38

• Function bdgraph.mpl() is added to the package, which is based on Marginal Pseudo-Likelihood estimation.
• In the algorithm gcgm, step copula are implimented in parallel using OpenMP in C++.
• Function bdgraph.ts is implimented in parallel using OpenMP in C++.
• New reference related to the ratio of normalizing constant is added to manual.

BDgraph Version 2.40

• Option g.prior is added to function bdgraph(), for prior distribution of the graph.
• Option cores is added to function bdgraph(), for determining the number of cores to use for parallel execution.
• Function transfer() is added to the package.

BDgraph Version 2.36

• The BDMCMC algorithms are implimented in parallel using OpenMP in C++.

BDgraph Version 2.28

• The Title in Description is changed.
• Functions bdgraph.ts(), rgcwish(), and rcwish() are added to the package.

BDgraph Version 2.24

• Function phat() is changed to plinks().
• Function prob() is changed to pgraph().
• Function log_Ig() is changed to gnorm().

BDgraph Version 2.23

• Function I.g() is chenged to log_Ig() and it is implemented in C++.

BDgraph Version 2.20

• Reversible jump MCMC algorithm is added to the bdgraph() fonction.

BDgraph Version 2.19

• The Title in Description is changed.
• Function I.g is added.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.