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dual_reg_parc
>
rather than
abs >
u
and z
for activtions, rather than
gamma
?
estimate_prior
* add custom smoothing * add parallel
over subjects
Fixes and cleaning up
Data pre-processing, for both prior estimation and TemplateICA *
norm_BOLD
replaces scale_BOLD
, since now it
detrends the data too. * Do not scale across space by default. Instead,
scale across space only where necessary (one of the regressions in dual
regression, and PCA-based operations). * Option to detrend. * Compute
scale after centering and detrending.
Dual regression * Option to normalize A matrix
Template estimation * Merge estimate_prior.cifti
and
estimate_prior.nifti
into estimate_prior
*
Option to denoise each scan before computing DR * If using pseudo retest
data, split each subject’s scan after denoising and detrending, not
before. * Option for different variance prior (non-negative) * Option to
obtain DR results * Return parameters, including data normalization
choices. * print
and summary
for priors
TemplateICA * Merge BrainMap.cifti
and
BrainMap.nifti
into BrainMap
* Option to
return DR results in estimate_prior
* Option to skip
dimension reduction * Option to use parallel computing for iterating
over voxels. * Option to provide "xifti"
or
"nifti"
objects directly * Option to provide multiple scans
* For denoising: replace maxQ
with Q2_max
to
simplify logic * Fix cases where time_inds
and
resamp_res
are provided. * Return parameters, including
data normalization choices. * Replace subject IC variance with the
standard error * summary
and plot
for
engagements
Misc * Implement sign matching * Refine group_ICA
*
Refine make_mesh
* Remove INLA required version (bring
back?)
For developers * Laid some groundwork for estimating priors using
>2 scans per subject: var_decomp
can handle >2 scans
per subject (but need to test it!) * New code prior calculation
Update functions that work with "xifti"
objects to
conserve time and memory.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.