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BayesianReasoning 0.4.2

Major updates

• New plot_cutoff()
  • Shows healthy and sick distributions and shows FP, FN, TP and TN depending on a cutoff point
    
• New remove_layers_cutoff_plot() functions
  • Get’s rid of layers of a cutoff_plot: FP, FN, TP or TN

Minor updates

• Fix for CRAN change in docType
• Use linewidth instead of size
• Faster implementation of a step in min_possible_prevalence

BayesianReasoning 0.4.1

Minor updates

• safely_show_image_Rmd() function to fail gracefully when URL not found in Rmd’s
• Add and fix checks in process_variables()
• Add tests to cover corner cases and new checks

BayesianReasoning 0.4.0

Major updates

• Refactored the way we calculate PPV and NPV
• Added new parameter to control type of y scale (one_out_of) # 33
• Added new parameter to control x axis (limits_Sensitivity and limits_Specificity)
• Added multiple checks to catch corner conditions
• Renamed lots of parameters to make things more coherent

Minor updates

• Avoid acronyms
• Add bold label to area overlay
• Get rid of extra character in legend
• Translate all elements in area overlay
• Changed palette for NPV plots
• Add tests for new parameters and checks
• Add extra info in area overlay

BayesianReasoning 0.3.3

Minor update

• x axis labels should always be equally spaced #37
• Update tests to work with upcoming ggplot2 #42
• Add default parameters to avoid errors #43
• Fix LazyData NOTE

BayesianReasoning 0.3.2

Clean up old comments, add more tests…

• 100% code coverage
• min_possible_prevalence() is now much more efficient
• Improvements to overlay = “line” en PPV_heatmap(), now using {ggforce} for labels
• Changed color palette for NPV
• Tweaked color palette for PPV

BayesianReasoning 0.3.1

Corrected issues raised in CRAN revision

• Reduced title to less than 65 characters
• Do not capitalize things in the Description text
• Added references to Description explaining main concepts
• Replaced cat() with message()
• Added folder parameter to PPV_diagnostic_vs_screening() and PPV_heatmap() functions

Added tests

• Added tests for all main functions
• Added codecov

BayesianReasoning 0.3.0

Global clean-up

• No more global environment vars
• PPV and NPV working
• Passes all CRAN checks

BayesianReasoning 0.2.0

Some improvements to stability

• Overlay works better
• Shiny app working

BayesianReasoning 0.1.0

Initial release, includes 3 functions:

• PPV_heatmap.R: Plot PPV heatmaps
  
• PPV_diagnostic_vs_screening.R: Plot PPV for a diagnostic and a screening group
  
• min_possible_prevalence.R: Show minimum possible prevalence given the test characteristics

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.