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CALANGO 1.0.20

• Regular maintenance update:
  • Minor bug fix that resulted in occasional errors on Windows machines
    
  • Minor updates to documentation
  • Minor tweak to dependencies
  • Fixed problem that resulted in retrieve_calanguize_genomes() wiping out the target folder

CALANGO 1.0.14

• Regular maintenance update:
  • Updated documentation, added links to published paper.

CALANGO 1.0.13

• Regular maintenance update:
  • Fixed Vignette listing. Added examples page as a full vignette.

CALANGO 1.0.12

• Regular maintenance update:

  • Added a second set of examples under Vignette “Usage Examples”.
  • Updated project home page, minor updates to documentation.
  • Minor changes to Rmd files to prevent pandoc errors.

CALANGO 1.0.10

• Regular maintenance update:

  • Updated project home page, minor updates to documentation.

CALANGO 1.0.8

• Regular maintenance update:

  • Minor internal changes to ensure compatibility with dendextend v1.15.2.
  • Changed naming standard of report plots to increase Windows compatibility: file names of correlation plots and boxplots now use “_” rather than “:”.

CALANGO 1.0.5

• Regular maintenance update:

  • Tested compatibility with taxize v1.0: OK
  • Added function retrieve_calanguize_genomes() to enable users to quickly retrieve the calanguize_genomes Perl script, which is useful for preparing data to be used with CALANGO
  • Removed input attribute url from function retrieve_data_files(). This does not break existing code - if url is passed it will just be ignored.
  • Updated package logo in all documentation.

CALANGO 1.0.2

• Initial CRAN release: Provides a small number of user-facing functions to:

  • Perform sophisticated association analyses between annotation terms and quantitative genotypes/phenotypes
  • Generate a full analysis website containing that can be easily shared with collaborators or the wider research community.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.