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Germline and somatic locus data which contain the total read depth and B allele read depth using Bayesian model (Dirichlet Process) to cluster. Meanwhile, the cluster model can deal with the SNVs mutation and the CNAs mutation.
| Version: | 1.0 |
| Depends: | lpSolve, mcclust, moments, DNAcopy, stats, R (≥ 2.10) |
| Published: | 2016-11-12 |
| DOI: | 10.32614/CRAN.package.CSclone |
| Author: | Peter Wu |
| Maintainer: | Peter Wu <peter123wu0 at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | CSclone results |
| Reference manual: | CSclone.pdf |
| Package source: | CSclone_1.0.tar.gz |
| Windows binaries: | r-devel: CSclone_1.0.zip, r-release: CSclone_1.0.zip, r-oldrel: CSclone_1.0.zip |
| macOS binaries: | r-release (arm64): CSclone_1.0.tgz, r-oldrel (arm64): CSclone_1.0.tgz, r-release (x86_64): CSclone_1.0.tgz, r-oldrel (x86_64): CSclone_1.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.