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CloneSeeker: Seeking and Finding Clones in Copy Number and Sequencing Data

Defines the classes and functions used to simulate and to analyze data sets describing copy number variants and, optionally, sequencing mutations in order to detect clonal subsets. See Zucker et al. (2019) <doi:10.1093/bioinformatics/btz057>.

Version: 1.0.11
Depends: R (≥ 3.0)
Imports: methods, graphics, combinat, mc2d, quantmod
Published: 2022-06-30
DOI: 10.32614/CRAN.package.CloneSeeker
Author: Kevin R. Coombes, Mark Zucker
Maintainer: Kevin R. Coombes <krc at silicovore.com>
License: Apache License (== 2.0)
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
CRAN checks: CloneSeeker results

Documentation:

Reference manual: CloneSeeker.pdf
Vignettes: CloneSeeker

Downloads:

Package source: CloneSeeker_1.0.11.tar.gz
Windows binaries: r-devel: CloneSeeker_1.0.11.zip, r-release: CloneSeeker_1.0.11.zip, r-oldrel: CloneSeeker_1.0.11.zip
macOS binaries: r-release (arm64): CloneSeeker_1.0.11.tgz, r-oldrel (arm64): CloneSeeker_1.0.11.tgz, r-release (x86_64): CloneSeeker_1.0.11.tgz, r-oldrel (x86_64): CloneSeeker_1.0.11.tgz
Old sources: CloneSeeker archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.