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CongreveLamsdell2016

This R package provides data and analyses that accompany the paper

• Smith, M. R. (2019), Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets, Biological Letters, 15:20180632, doi:10.1098/rsbl.2018.0632.

It incorporates data from:

• Congreve, C. R., and J. C. Lamsdell. 2016. Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Palaeontology, 59:447–462. doi:10.1111/pala.12236.

• Congreve, C. R., and J. C. Lamsdell. 2016. Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Dryad Digital Repository, doi:10.5061/dryad.7dq0j.

Some of these data are used in the Quartet package.

Equivalent data and analyses from data simulated by O’Reilly et al. (2016) are available at ms609.github.io/OReillyEtAl2016.

Installation

Install and load the library from CRAN as follows:

install.packages('CongreveLamsdell2016')
library('CongreveLamsdell2016')

Documentation

The package includes documentation and visualizations of its results:

• R Package manual: PDF

• How to conduct the analyses: HTML | PDF

• Node support comparisons: HTML | PDF

• Comparisons of phylogenetic methods: HTML | PDF

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.