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Analyzes spatial transcriptomic data using cells-by-genes and cell location matrices to find gene pairs that coordinate their expression between spatially adjacent cells. It enables quantitative analysis and graphical assessment of these cross-expression patterns. See Sarwar et al. (2025) <doi:10.1101/2024.09.17.613579> and <https://github.com/gillislab/CrossExpression/> for more details.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rfast, RANN, Matrix, ggplot2, dplyr, stats, stringr |
| Published: | 2025-07-28 |
| DOI: | 10.32614/CRAN.package.CrossExpression |
| Author: | Ameer Sarwar [aut, cre], Sarah Choi [ctb], Leon French [ctb], Jesse Gillis [aut] |
| Maintainer: | Ameer Sarwar <dogar.ameer at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| CRAN checks: | CrossExpression results |
| Reference manual: | CrossExpression.html , CrossExpression.pdf |
| Package source: | CrossExpression_1.0.0.tar.gz |
| Windows binaries: | r-devel: CrossExpression_1.0.0.zip, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): CrossExpression_1.0.0.tgz, r-oldrel (arm64): CrossExpression_1.0.0.tgz, r-release (x86_64): CrossExpression_1.0.0.tgz, r-oldrel (x86_64): CrossExpression_1.0.0.tgz |
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