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Cyclops v3.4.1

Changes:

  1. fix some NaN/-Inf inconsistencies with likelihood profiling

Cyclops v3.4.0

Changes:

  1. remove dependence on BH
  2. improvements on adaptive likelihood profiling
  3. add auto option to cvRepetitions
  4. bumped explicit C++11 requirement up to R v4.1
  5. removed deprecated use of dbplyr:::$.tbl_lazy
    1. breaking change in dbplyr v2.4.0

Cyclops v3.3.1

Changes:

  1. fix uninitialized value in detected in computeAsymptoticPrecisionMatrix(); value was priorType
  2. fix memory leak caused by call to ::Rf_error()
  3. fix line-endings on Makevar on windows

Cyclops v3.3.0

  1. bump for R 4.2
  2. fix CRAN warnings
    1. used minValues
  3. fix CRAN notes
    1. remove explicit dependence on C++11 (except for R <= 4.0)

Cyclops v3.2.1

Changes:

  1. fix small memory leak caused by direct call to ‘::Rf_error()’
  2. disable JVM calls on CRAN due to uninitialized memory in Java JVM

Cyclops v3.2.0

Changes:

  1. fixed likelihood profiling when non-convex due to numerical instability
  2. fixed parsing of 64-bit covariate IDs
  3. fix BLR convergence criterion when there are 0 (survival) events
  4. add Jeffrey’s prior for single regression coefficient

Cyclops v3.1.2

Changes:

  1. adaptive likelihood profiling when objective function is concave.

Cyclops v3.1.1

Changes:

  1. specify new option nocenter in survival package when testing predicted hazard function

Cyclops v3.1.0

Changes:

  1. implement Fine-Gray competing risks regression
  2. fixed getCyclopsProfileLogLikelihood when starting with extreme coefficients

Cyclops v3.0.0

Changes:

  1. switch to Andromeda from ff to hold large datasets. This change breaks API

Cyclops v2.0.4

Changes:

  1. removed, unused variable imputation functions that contained a std::exit

Cyclops v2.0.3

Changes:

  1. fix computation under conditional Poisson models by reverting to v1.3.4-style loop
  2. fix several unit-tests for compatibility with R 4.0 factors
  3. add ability to profile likelihood function in parallel
  4. add initial infrastructure for competing risks models

Cyclops v2.0.2

Changes:

  1. use RNGversion("3.5.0") in unit-tests to reproduce old RNG behavior
  2. fix prior-type checks when specifying multiple types

Cyclops 2.0.1

Changes:

  1. patch two memory leaks in ModelData.cpp and ModelSpecifics.hpp

Cyclops 2.0.0

Changes:

  1. simplify internal transformation-reductions loops
  2. implemented non-negative weights
  3. allow for run-time selection of 32-/64-bit reals
  4. remove dependence on GNUmake
  5. temporarily remove dependence on RcppParallel (until TBB is again R-compliant)

Cyclops 1.3.4

Changes:

  1. fix undeclared dependencies in unit-tests: MASS and microbenchmarks
  2. fix issues with ATLAS compilation
  3. add contexts to testthat files
  4. fix ASAN errors in AbstractModelSpecifics

Cyclops 1.3.3

Changes:

  1. fix testthat expected error message

Cyclops 1.3.2

Changes:

  1. explicitly includes <complex> header, needed for R 3.5 builds
  2. remove pragma statements used to quiet RcppEigen and RcppParallel

Cyclops 1.3.1

Changes:

  1. fixes covariate indices returned from .checkCovariates when excluding covariates from regularization

Cyclops 1.3.0

Changes:

  1. implements specialized priors through callbacks for use, for example, in the BrokenAdaptiveRidge package to provide L0-based model selection
  2. implements specialized control through callbacks for use, for example, auto-and-grid-based cross-validation hyperparameter searches
  3. removes src/boost that clashes with BH 1.65.0

Cyclops 1.2.3

Changes:

  1. fixed predict error with ff.data.frame with size == 0

Cyclops 1.2.2

Changes:

  1. fixed solaris build errors
  2. added compatibility for C++14 (make_unique)
  3. fixed multiple ASan warnings

Cyclops 1.2.0

Changes: initial submission to CRAN

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.