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Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.
| Version: | 0.1.1 |
| Imports: | stats, Biostrings, Rcpp |
| LinkingTo: | Rcpp |
| Published: | 2024-09-27 |
| DOI: | 10.32614/CRAN.package.DNAmotif |
| Author: | Subham Ghosh [aut, cre], UB Angadi [aut], Md Yeasin [aut], Dipro Sinha [aut], Saikath Das [aut], Mir Asif Iquebal [aut], Sarika [aut] |
| Maintainer: | Subham Ghosh <search4aghosh at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| CRAN checks: | DNAmotif results |
| Reference manual: | DNAmotif.pdf |
| Package source: | DNAmotif_0.1.1.tar.gz |
| Windows binaries: | r-devel: DNAmotif_0.1.1.zip, r-release: DNAmotif_0.1.1.zip, r-oldrel: DNAmotif_0.1.1.zip |
| macOS binaries: | r-release (arm64): DNAmotif_0.1.1.tgz, r-oldrel (arm64): DNAmotif_0.1.1.tgz, r-release (x86_64): DNAmotif_0.1.1.tgz, r-oldrel (x86_64): DNAmotif_0.1.1.tgz |
| Old sources: | DNAmotif archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.