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Generates DNA sequences based on Markov model techniques for matched sequences. This can be generalized to several sequences. The sequences (taxa) are then arranged in an evolutionary tree (phylogenetic tree) depicting how taxa diverge from their common ancestors. This gives the tests and estimation methods for the parameters of different models. Standard phylogenetic methods assume stationarity, homogeneity and reversibility for the Markov processes, and often impose further restrictions on the parameters.
| Version: | 1.0 |
| Published: | 2016-03-24 |
| DOI: | 10.32614/CRAN.package.DNAseqtest |
| Author: | Faisal Ababneh, John Robinson, Lars S Jermiin and Hasinur Rahaman Khan |
| Maintainer: | Hasinur Rahaman Khan <hasinurkhan at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| CRAN checks: | DNAseqtest results |
| Reference manual: | DNAseqtest.pdf |
| Package source: | DNAseqtest_1.0.tar.gz |
| Windows binaries: | r-devel: DNAseqtest_1.0.zip, r-release: DNAseqtest_1.0.zip, r-oldrel: DNAseqtest_1.0.zip |
| macOS binaries: | r-release (arm64): DNAseqtest_1.0.tgz, r-oldrel (arm64): DNAseqtest_1.0.tgz, r-release (x86_64): DNAseqtest_1.0.tgz, r-oldrel (x86_64): DNAseqtest_1.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.