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virusMetadata
field to
DataSpaceConnection
which shows virus metadata for viruses
used in NAb assays (thanks @helenmiller16 #26)availablePublications
field to
DataSpaceConnection
which summarizes all available
publications (thanks @helenmiller16 #27)downloadPublicationData
method to
DataSpaceConnection
which will download available
publication data for a specified publication (thanks @helenmiller16
#27)Accessing Publication Data
(thanks
@helenmiller16
#27)PKMAb
dataset available to retrieve in
DataSpaceStudy
(thanks @helenmiller16 and @jmtaylor-fhcrc
#27)mabGridSummary$geometric_mean_curve_ic50
calculation to
reflect updated data. (thanks @helenmiller16 #28)tolower
in functions that check study names.
(thanks @jmtaylor-fhcrc #23)DataSpaceMab
class and several methods and fields
in DataSpaceConnection
to allow access to monoclonal
antibody data (thanks @jmtaylor-fhcrc #14, #19, #21)writeNetrc
. (CRAN requirement)getDataset
method in
DataSpaceStudy
to take mergeExtra
as an
argument in order to merge extra information (demographics and treatment
arm). #5DataSpaceConnection
and
DataSpaceStudy
classes to convert data.frame objects to
data.table.getGroup
method in
DataSpaceConnection
class and deprecated
groupId
in getStudy
method.refresh
method for both connection and study
classes.studyInfo
field in study class.short_name
,
type
, status
, stage
,
species
, start_date
, strategy
) in
availableStudies
.availableGroups
field to
DataSpaceConnection
class.getStudy
method in
DataSpaceConnection
to take groupId
as an
argument in order to create a DataSpaceStudy
object for a
particular group.DataSpaceConnection
class and
connectDS
constructor to be not study-specific.getUserEmail()
to get email from netrc
file.getVariableInfo
method to
DataSpaceConnection
class.getAvailableDatasets
to
lowercase.treatmentArm
field to
DataSpaceConnection
class.getAvailableDatasets
method (now a private
method).dataspace-staging.cavd.org
) to production
(dataspace.cavd.org
).write_netrc
and check_netrc
to
writeNetrc
and checkNetrc
.connectDS()
and other
basic functions.tests
to test the
package..travis.yml
to build and check the package
automatically. (not used yet)codecov.yml
to track code coverage. (not used
yet)README.Rmd
to introduce the package.NEWS.md
to track changes to the package._pkgdown.yml
and /docs
to build a
package website.Intro_to_DataSpaceR.Rmd
.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.