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Bug Fixes
- Updated Readme file
- Fixes to new maxent interface
New features
- Updated the entire package to use terra instead of raster
- Numerous other bug fixes and behind-the-scenes improvements
Bug Fixes
- Fixed issues with background buffer when mask and points didn’t
overlap
- Added citation for breadth measurements
Bug Fixes
- Permutations for background tests were selecting presences from both
species’ ranges, leading to incorrect values for hypothesis tests.
Bug Fixes
- Raes and ter Steege-style tests were returning incorrect evaluate
objects, although plots and p values were correct
- test.prop = “block” wasn’t working correctly
Enhancements
- Suppressing maxent startup messages by default
- Added support for bias layers to modeling functions
- Added check.env function to homogenize raster stacks so NAs
propagate across layers
Enhancements
- Brought up to date for new spatstat changes
- Removed ppmlasso until it is brought back on
CRAN
Enhancements
- Added a new general-purpose function for making background layers
from point data. It can do both circular buffers and buffered convex
hulls, and can return points, a polygon, or a raster. Converted the
existing background buffer functions to just call this one, and will
eventually deprecate the single-application functions.
- Added ability to select which corner you want for “block”
validation.
- Added a function called multi.variogram which takes a
raster stack, builds a variogram for each layer, and then plots the
gamma for each variable as a function of distance, scaled by the maximum
gama for that variable. This allows users to get some idea of the level
of spatial autocorrelation in each predictor variable.
Bug fixes
- Minor update to fix an rgdal import that was making CRAN angry
Bug fixes
- Minor update to fix an rgdal import that was making CRAN angry
Enhancements
- Added variable importance tests via interface with the vip
package
- Added clamping for the predict functions, including plots
of where clamping is happening
- Added clamping for model construction functions, with a TRUE/FALSE
switch defaulting to TRUE
- Changed naming conventions for predict functions so that
the suitability raster is in the $suitability slot, just as with
modeling functions
- Added progress bars for a lot of tests
- Added “verbose” option for a lot of functions, defaulting to
FALSE
Bug fixes
- Fixed interactive.plot generic and moved the function to its own
file to make it easier to extend
- Temporarily suppressing some warnings coming out of leaflet
that are being produced by the recent rgdal changes
- Fixed background sampling code to resample when necessary
- Changed enmtools.ranger demo code to actually use
ranger instead of rf
- Fixed code for calculating p values for some of the hypothesis
tests, the old code was getting wrong answers when there were repeated
values
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.