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A tool to estimate time varying instantaneous reproduction number during epidemics
This tool is described in the following paper:
A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics Anne Cori, Neil M. Ferguson, Christophe Fraser and Simon Cauchemez American Journal of Epidemiology 2013.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.