The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
The method proposed in this package takes into account the impact of dependence on the multiple testing procedures for high-throughput data as proposed by Friguet et al. (2009). The common information shared by all the variables is modeled by a factor analysis structure. The number of factors considered in the model is chosen to reduce the false discoveries variance in multiple tests. The model parameters are estimated thanks to an EM algorithm. Adjusted tests statistics are derived, as well as the associated p-values. The proportion of true null hypotheses (an important parameter when controlling the false discovery rate) is also estimated from the FAMT model. Graphics are proposed to interpret and describe the factors.
| Version: | 2.6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | mnormt, impute |
| Published: | 2022-05-09 |
| DOI: | 10.32614/CRAN.package.FAMT |
| Author: | David Causeur, Chloe Friguet, Magalie Houee-Bigot, Maela Kloareg |
| Maintainer: | David Causeur <David.Causeur at agrocampus-ouest.fr> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://famt.free.fr/ |
| NeedsCompilation: | no |
| CRAN checks: | FAMT results |
| Reference manual: | FAMT.pdf |
| Package source: | FAMT_2.6.tar.gz |
| Windows binaries: | r-devel: FAMT_2.6.zip, r-release: FAMT_2.6.zip, r-oldrel: FAMT_2.6.zip |
| macOS binaries: | r-release (arm64): FAMT_2.6.tgz, r-oldrel (arm64): FAMT_2.6.tgz, r-release (x86_64): FAMT_2.6.tgz, r-oldrel (x86_64): FAMT_2.6.tgz |
| Old sources: | FAMT archive |
Please use the canonical form https://CRAN.R-project.org/package=FAMT to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.