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A flexible and interfaced framework for importing, processing and ploting Applied Biosystems data files. Application to Reverse-Transcriptase Multiplex Ligation-dependent Probe Amplification (RT-MLPA) gene-expression profiling and classification is illustrated in Mareschal, Ruminy et al (2015) <doi:10.1016/j.jmoldx.2015.01.007>. Gene-fusion detection and Sanger sequencing are illustrated in Mareschal, Palau et al (2021) <doi:10.1182/bloodadvances.2020002517>. Examples are provided for genotyping applications as well.
| Version: | 2.0.5 |
| Depends: | graphics, grDevices, stats, utils, R (≥ 2.10) |
| Imports: | methods |
| Suggests: | Biostrings, parallel, tcltk, tools |
| Published: | 2023-08-18 |
| Author: | Sylvain Mareschal [aut, cre], Philippe Ruminy [dtc, ctb], Jean R. Lobry [ctb], Fabrice Jardin [ths] |
| Maintainer: | Sylvain Mareschal <mareschal at ovsa.fr> |
| BugReports: | https://github.com/maressyl/R.FSAtools/issues |
| License: | GPL (≥ 3) |
| URL: | https://bioinformatics.ovsa.fr/FSAtools |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | FSAtools results |
| Reference manual: | FSAtools.pdf |
| Package source: | FSAtools_2.0.5.tar.gz |
| Windows binaries: | r-devel: FSAtools_2.0.5.zip, r-release: FSAtools_2.0.5.zip, r-oldrel: FSAtools_2.0.5.zip |
| macOS binaries: | r-release (arm64): FSAtools_2.0.5.tgz, r-oldrel (arm64): FSAtools_2.0.5.tgz, r-release (x86_64): FSAtools_2.0.5.tgz, r-oldrel (x86_64): FSAtools_2.0.5.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.