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The R package ‘FishResp’ is designed to calculate metabolic rate of aquatic organisms measured using an intermittent-flow respirometry approach. Raw respirometry data can be imported from:
The idea behind FishResp, an analysis pipeline and case studies are described in the academic publication by Morozov et al. (2019). Technical information about R functions and demo data can be found in Reference Manual. Brief descriptions of the R package ‘FishResp’ and other open-source tools for aquatic respirometry are located at the website fishresp.org.
The stable version of the ‘FishResp’ package can be installed from
CRAN:install.packages("FishResp").
Alternativelly, download the latest release from GitHub and install
using the following command:
devtools::install_github("embedded-sergey/FishResp-Rpackage@*release").
If you are not familiar with the R language, please check out the graphical implementation of the R package: FishRespGUI.
To cite FishResp please refer to: “Morozov, S., McCairns, R.J.S., Merila, J. (2019) FishResp: R package and GUI application for analysis of aquatic respirometry data. Conserv Physiol 7(1): coz003; https://doi.org/10.1093/conphys/coz003”.
To see the list of changes made in various versions of the R package, read the file ‘NEWS.md’.
If you find a bug, please report about it on the FishResp forum or through the GitHub repository.
The individuals and organizations who developed, contributed to, or funded the FishResp project are acknowledged here.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.