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FuncDiv is an R package for computing contributional
diversity of joint taxa-function data.
It is described in this paper: Gavin M. Douglas, Sunu Kim, Morgan G. I. Langille, B. Jesse Shapiro. 2023. Efficient computation of contributional diversity metrics from microbiome data with FuncDiv. Bioinformatics 39 (1): btac809. DOI: 10.1093/bioinformatics/btac809
All feedback is appreciated! Please open an issue on this repository if you would like to ask a question or make a comment.
Please see our wiki site for the documentation.
Licensing note: This repository contains modified code
(specifically in R/beta_workflow.R and
src/rbiom_par_unifrac.cpp) from version 1.0.3 of the
rbiom R package (link to original source
code). The original code and FuncDiv are distributed under
GNU Affero
General Public Licenses.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.