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It provides an effective, efficient, and fast way to explore the Gene Ontology (GO). Given a set of genes, the package contains functions to assess the GO and obtain the terms associated with the genes and the levels of the GO terms. The package provides functions for the three different GO ontology. We discussed the methods explicitly in the following article <doi:10.1038/s41598-020-73326-3>.
| Version: | 1.2.7 |
| Depends: | R (≥ 2.10), GO.db, gontr, ggraph |
| Imports: | igraph, network, dplyr, biomaRt, annotate, graphics, ggplot2 |
| Suggests: | knitr, rmarkdown |
| Published: | 2023-11-03 |
| DOI: | 10.32614/CRAN.package.GOxploreR |
| Author: | Kalifa Manjang, Frank Emmert-Streib, Shailesh Tripathi, Olli Yli-Harja, Matthias Dehmer |
| Maintainer: | Kalifa Manjang <kalifamanjang1 at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| In views: | Omics |
| CRAN checks: | GOxploreR results |
| Reference manual: | GOxploreR.pdf |
| Vignettes: |
GOxploreR |
| Package source: | GOxploreR_1.2.7.tar.gz |
| Windows binaries: | r-devel: GOxploreR_1.2.7.zip, r-release: GOxploreR_1.2.7.zip, r-oldrel: GOxploreR_1.2.7.zip |
| macOS binaries: | r-release (arm64): GOxploreR_1.2.7.tgz, r-oldrel (arm64): GOxploreR_1.2.7.tgz, r-release (x86_64): GOxploreR_1.2.7.tgz, r-oldrel (x86_64): GOxploreR_1.2.7.tgz |
| Old sources: | GOxploreR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.