The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

IgAScores: Score Taxon-Level IgA Binding in IgA-Seq Experiments

Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.

Version: 0.1.2
Depends: R (≥ 3.5.0)
Suggests: knitr, markdown
Published: 2020-09-01
DOI: 10.32614/CRAN.package.IgAScores
Author: Matthew Jackson [aut, cre, cph]
Maintainer: Matthew Jackson <mattjackson4 at gmail.com>
License: GPL-3
URL: https://doi.org/10.1101/2020.08.19.257501
NeedsCompilation: no
Citation: IgAScores citation info
Materials: README NEWS
CRAN checks: IgAScores results

Documentation:

Reference manual: IgAScores.pdf
Vignettes: The IgAScores Package

Downloads:

Package source: IgAScores_0.1.2.tar.gz
Windows binaries: r-devel: IgAScores_0.1.2.zip, r-release: IgAScores_0.1.2.zip, r-oldrel: IgAScores_0.1.2.zip
macOS binaries: r-release (arm64): IgAScores_0.1.2.tgz, r-oldrel (arm64): IgAScores_0.1.2.tgz, r-release (x86_64): IgAScores_0.1.2.tgz, r-oldrel (x86_64): IgAScores_0.1.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=IgAScores to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.