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Functions to calculate indices used to score immunoglobulin A (IgA) binding of bacteria in IgA sequencing (IgA-Seq) experiments. This includes the original Kau and Palm indices and more recent methods as described in Jackson et al. (2020) <doi:10.1101/2020.08.19.257501>. Additionally the package contains a function to simulate IgA-Seq data and an example experimental data set for method testing.
| Version: | 0.1.2 |
| Depends: | R (≥ 3.5.0) |
| Suggests: | knitr, markdown |
| Published: | 2020-09-01 |
| DOI: | 10.32614/CRAN.package.IgAScores |
| Author: | Matthew Jackson [aut, cre, cph] |
| Maintainer: | Matthew Jackson <mattjackson4 at gmail.com> |
| License: | GPL-3 |
| URL: | https://doi.org/10.1101/2020.08.19.257501 |
| NeedsCompilation: | no |
| Citation: | IgAScores citation info |
| Materials: | README NEWS |
| CRAN checks: | IgAScores results |
| Reference manual: | IgAScores.pdf |
| Vignettes: |
The IgAScores Package |
| Package source: | IgAScores_0.1.2.tar.gz |
| Windows binaries: | r-devel: IgAScores_0.1.2.zip, r-release: IgAScores_0.1.2.zip, r-oldrel: IgAScores_0.1.2.zip |
| macOS binaries: | r-release (arm64): IgAScores_0.1.2.tgz, r-oldrel (arm64): IgAScores_0.1.2.tgz, r-release (x86_64): IgAScores_0.1.2.tgz, r-oldrel (x86_64): IgAScores_0.1.2.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.