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InteRD has three primary advantages. First, it is able to effectively integrate deconvolution results from multiple scRNA-seq datasets. Second, InteRD calibrates estimates from reference-based deconvolution by taking into account extra biological information as priors. Third, InteRD is equipped with a data-driven mechanism of self-control designed to be robust to the introduction of inaccurate information in the deconvolution system.
You can install the released version of InteRD with:
#install devtools if necessary
install.packages("devtools")
#install the InteRD package
devtools::install_github("chencxxy28/InteRD")
#load
library(InteRD)If Biobase package is not available, please install it first before installation of InteRD
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Biobase")Please visit Tutorial.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.