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LDAandLDAS: Linkage Disequilibrium of Ancestry (LDA) and LDA Score (LDAS)

Computation of linkage disequilibrium of ancestry (LDA) and linkage disequilibrium of ancestry score (LDAS). LDA calculates the pairwise linkage disequilibrium of ancestry between single nucleotide polymorphisms (SNPs). LDAS calculates the LDA score of SNPs. The methods are described in Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Version: 1.1.3
Depends: R (≥ 3.5.0)
Imports: Rcpp (≥ 1.0.8), parallel
LinkingTo: Rcpp
Published: 2024-02-09
DOI: 10.32614/CRAN.package.LDAandLDAS
Author: Yaoling Yang ORCID iD [aut, cre], Daniel Lawson ORCID iD [aut]
Maintainer: Yaoling Yang <yaoling.yang at bristol.ac.uk>
License: GPL-3
NeedsCompilation: yes
Materials: README
CRAN checks: LDAandLDAS results

Documentation:

Reference manual: LDAandLDAS.pdf

Downloads:

Package source: LDAandLDAS_1.1.3.tar.gz
Windows binaries: r-devel: LDAandLDAS_1.1.3.zip, r-release: LDAandLDAS_1.1.3.zip, r-oldrel: LDAandLDAS_1.1.3.zip
macOS binaries: r-release (arm64): LDAandLDAS_1.1.3.tgz, r-oldrel (arm64): LDAandLDAS_1.1.3.tgz, r-release (x86_64): LDAandLDAS_1.1.3.tgz, r-oldrel (x86_64): LDAandLDAS_1.1.3.tgz
Old sources: LDAandLDAS archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.