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Local Taxa Tool (LocaTT)

The Local Taxa Tool (LocaTT, pronounced “locate”) is an R package for performing taxonomic assignment of DNA metabarcoding sequence data while considering geographic location. A detailed tutorial is available at https://urodelan.github.io/Local_Taxa_Tool_Tutorial/.

Installation

The current version of the LocaTT package can be installed from the Comprehensive R Archive Network (CRAN):

# Install the LocaTT package from the CRAN.
install.packages("LocaTT")

# Load the LocaTT package.
library(LocaTT)

The development version of the LocaTT package can be installed from GitHub:

# Install the devtools package.
install.packages("devtools")

# Load the devtools package.
library(devtools)

# Install the LocaTT package from GitHub.
devtools::install_github("Urodelan/LocaTT")

# Load the LocaTT package.
library(LocaTT)

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.