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LorMe

LorMe package for R：Lightening One-code Resolving Microbial Ecology Program. LorMe keeps updating and maintanence.

Suggestions and bug report

2434066068@qq.com

Installation

development version from GitHub :stuck_out_tongue_closed_eyes:

if (!require(remotes)) install.packages("remotes")
remotes::install_github("wangnq111/LorMe")

Illustration

Chinese version

Chinese illustration available at 🏮 LorMe中文版说明书 🏮 ## Visualization

Community Feature

Alpha diversity

Community Structure

Support three styles: ellipse (as in the below),stick and polygon

Community Composition

Support three styles: Bar plot (as in the below), Area plot and alluvial plot

Differential Analysis

Differential Bar

Volcano Plot

Support Fold change-FDR plot and Mean-Fold change plot

Manhatton Plot

Support both classical style and circular style

Network analysis

Classical network

Painted top five largest modules

Meta network

Painted differential taxon

Module composition pie chart

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.