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MACER: Molecular Acquisition, Cleaning, and Evaluation in R 'MACER'
To assist biological researchers in assembling taxonomically and marker focused molecular sequence data sets. 'MACER' accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The 'MACER' package has four core functions and an example run through using all of these functions can be found in the associated repository <https://github.com/rgyoung6/MACER_example>.
| Version: |
0.2.1 |
| Imports: |
rentrez, ape, httr, stats, utils, ggplot2, parallel, pbapply, grDevices, png |
| Published: |
2022-12-02 |
| DOI: |
10.32614/CRAN.package.MACER |
| Author: |
Robert G Young 
[aut, cre, cph],
Rekkab Gill [aut],
Daniel Gillis [aut],
Robert H Hanner [aut, cph] |
| Maintainer: |
Robert G Young <rgyoung6 at gmail.com> |
| License: |
GPL-2 | GPL-3 |
| URL: |
<https://github.com/rgyoung6/MACER> |
| NeedsCompilation: |
no |
| Language: |
en-GB |
| Materials: |
README |
| CRAN checks: |
MACER results |
Documentation:
Downloads:
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.