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Thank you for taking the time to contribute to Micro-MoB (Microsimulation for Mosquito-Borne pathogens).
If you find a bug, have a question about how to use a feature that does not have sufficient documentation, or have a suggestion for improvement, please leave an issue at our GitHub repo.
For bug reports please include:
We use Git on this project. Which means we use main
,
dev
, feat/*
, bug/*
, and
hotfix/*
branches. Please refer to this
post for more information of each type of branch.
main
: this branch always stores the last “production”
release of the software, and is a protected branch. A pull request
should not be submitted to main
unless it is from
dev
, meaning that the software version should be
updated.dev
: all pull requests from users should be made to the
dev
branch. This branch is protected from deletion.feat
: new and significantly enhanced features are made
in feat
branches before being merged with dev
.
After a feat/*
branch is merged with dev
, it
can be deleted.bug
: these branches fix bugs, usually after being
raised as an issue. After a bug/*
branch is merged with
dev
, it can be deleted.hotfix
: the difference between a bug/*
and
hotfix/*
branch is hotfix
is for small quick
fixes (misspellings, incorrect arguments, etc.) and are short-lived.
After being merged with dev
, they can be deleted.We periodically merge dev
into main
for
small release updates. These releases will appear on the GitHub releases
page.
We use GitHub Actions as our continuous integration platform to run workflows. The workflows we use are from r-lib/actions for R packages.
We run three types of workflows.
R
CMD check runs during any pull request to [main, dev]
branches.
Test
coverage runs during pull requests to [main, dev]
and
uses our codecov.io
integration for checking test coverage.
Finally, pkgdown
only runs on pushes to main
, which will occur when
dev
is merged with main
periodically.
Please note that sometimes hard to diagnose bugs can be due to out of date workflows. If you find a strange or unusual bug coming from a workflow, this is something to consider checking.
If making a pull request, please only use dev
as the
base branch. If you are adding a new feature (i.e. the pull is from a
feat/*
branch), please ensure you have added minimal tests
using testthat so that the functionality of your feature can be
tested.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.