The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Below are some examples demonstrating unsupervised learning with NNS clustering and nonlinear regression using the resulting clusters. As always, for a more thorough description and definition, please view the References.
NNS.part()
NNS.part
is both a partitional and
hierarchical clustering method. NNS
iteratively partitions
the joint distribution into partial moment quadrants, and then assigns a
quadrant identification (1:4) at each partition.
NNS.part
returns a
data.table
of observations along with their final quadrant
identification. It also returns the regression points, which are the
quadrant means used in NNS.reg
.
x = seq(-5, 5, .05); y = x ^ 3
for(i in 1 : 4){NNS.part(x, y, order = i, Voronoi = TRUE, obs.req = 0)}
NNS.part
offers a partitioning based on
\(x\) values only
NNS.part(x, y, type = "XONLY", ...)
, using
the entire bandwidth in its regression point derivation, and shares the
same limit condition as partitioning via both \(x\) and \(y\) values.
Note the partition identifications are limited to 1’s and 2’s (left and right of the partition respectively), not the 4 values per the \(x\) and \(y\) partitioning.
## $order
## [1] 4
##
## $dt
## x y quadrant prior.quadrant
## 1: -5.00 -125.0000 q1111 q111
## 2: -4.95 -121.2874 q1111 q111
## 3: -4.90 -117.6490 q1111 q111
## 4: -4.85 -114.0841 q1111 q111
## 5: -4.80 -110.5920 q1111 q111
## ---
## 197: 4.80 110.5920 q2222 q222
## 198: 4.85 114.0841 q2222 q222
## 199: 4.90 117.6490 q2222 q222
## 200: 4.95 121.2874 q2222 q222
## 201: 5.00 125.0000 q2222 q222
##
## $regression.points
## quadrant x y
## 1: q111 -4.4136250 -87.0661563
## 2: q112 -3.1635313 -32.4322620
## 3: q121 -1.9133437 -7.4753437
## 4: q122 -0.6634375 -0.3238252
## 5: q211 0.5866563 0.2366875
## 6: q212 1.8366563 6.6437852
## 7: q221 3.0862812 30.1590941
## 8: q222 4.3613732 84.1050922
NNS.reg()
NNS.reg
can fit any \(f(x)\), for both uni- and multivariate
cases. NNS.reg
returns a self-evident list
of values provided below.
## $R2
## [1] 0.9999996
##
## $SE
## [1] 0.04287529
##
## $Prediction.Accuracy
## NULL
##
## $equation
## NULL
##
## $x.star
## NULL
##
## $derivative
## Coefficient X.Lower.Range X.Upper.Range
## 1: 74.252500000 -5.00000000 -4.95000000
## 2: 71.302500000 -4.95000000 -4.80000000
## 3: 66.982500000 -4.80000000 -4.65000000
## 4: 62.797500000 -4.65000000 -4.50000000
## 5: 58.747500000 -4.50000000 -4.35000000
## 6: 54.832500000 -4.35000000 -4.20000000
## 7: 51.052500000 -4.20000000 -4.05000000
## 8: 47.103363520 -4.05000000 -3.88757324
## 9: 43.323228231 -3.88757324 -3.70000000
## 10: 39.427500000 -3.70000000 -3.55000000
## 11: 36.232500000 -3.55000000 -3.40000000
## 12: 33.172500000 -3.40000000 -3.25000000
## 13: 30.247500000 -3.25000000 -3.10000000
## 14: 27.457500000 -3.10000000 -2.95000000
## 15: 24.802500000 -2.95000000 -2.80000000
## 16: 22.075993537 -2.80000000 -2.63757324
## 17: 19.513140049 -2.63757324 -2.45000000
## 18: 16.927500000 -2.45000000 -2.30000000
## 19: 14.857500000 -2.30000000 -2.15000000
## 20: 12.922500000 -2.15000000 -2.00000000
## 21: 11.122500000 -2.00000000 -1.85000000
## 22: 9.457500000 -1.85000000 -1.70000000
## 23: 7.927500000 -1.70000000 -1.55000000
## 24: 6.423670900 -1.55000000 -1.38757324
## 25: 5.078010868 -1.38757324 -1.20000000
## 26: 3.802500000 -1.20000000 -1.05000000
## 27: 2.857500000 -1.05000000 -0.90000000
## 28: 2.047500000 -0.90000000 -0.75000000
## 29: 1.372500000 -0.75000000 -0.60000000
## 30: 0.832500000 -0.60000000 -0.45000000
## 31: 0.427500000 -0.45000000 -0.30000000
## 32: 0.145042838 -0.30000000 -0.13757324
## 33: 0.034017962 -0.13757324 -0.04378662
## 34: 0.004006248 -0.04378662 0.05000000
## 35: 0.052500000 0.05000000 0.20000000
## 36: 0.232500000 0.20000000 0.35000000
## 37: 0.547500000 0.35000000 0.50000000
## 38: 0.997500000 0.50000000 0.65000000
## 39: 1.582500000 0.65000000 0.80000000
## 40: 2.302500000 0.80000000 0.95000000
## 41: 3.240170224 0.95000000 1.11242676
## 42: 4.336091045 1.11242676 1.30000000
## 43: 5.677500000 1.30000000 1.45000000
## 44: 6.982500000 1.45000000 1.60000000
## 45: 8.422500000 1.60000000 1.75000000
## 46: 9.997500000 1.75000000 1.90000000
## 47: 11.707500000 1.90000000 2.05000000
## 48: 13.552500000 2.05000000 2.20000000
## 49: 15.708643845 2.20000000 2.36242676
## 50: 18.029602043 2.36242676 2.55000000
## 51: 20.677500000 2.55000000 2.70000000
## 52: 23.107500000 2.70000000 2.85000000
## 53: 25.672500000 2.85000000 3.00000000
## 54: 28.372500000 3.00000000 3.15000000
## 55: 31.207500000 3.15000000 3.30000000
## 56: 34.177500000 3.30000000 3.45000000
## 57: 37.563906884 3.45000000 3.61242676
## 58: 41.087904139 3.61242676 3.80000000
## 59: 45.052500000 3.80000000 3.95000000
## 60: 48.607500000 3.95000000 4.10000000
## 61: 52.622363971 4.10000000 4.26242676
## 62: 56.792988741 4.26242676 4.45000000
## 63: 61.432500000 4.45000000 4.60000000
## 64: 65.572500000 4.60000000 4.75000000
## 65: 70.213534871 4.75000000 4.91242676
## 66: 73.350809172 4.91242676 5.00000000
## Coefficient X.Lower.Range X.Upper.Range
##
## $Point.est
## NULL
##
## $pred.int
## NULL
##
## $regression.points
## x y
## 1: -5.00000000 -1.250000e+02
## 2: -4.95000000 -1.212874e+02
## 3: -4.80000000 -1.105920e+02
## 4: -4.65000000 -1.005446e+02
## 5: -4.50000000 -9.112500e+01
## 6: -4.35000000 -8.231287e+01
## 7: -4.20000000 -7.408800e+01
## 8: -4.05000000 -6.643012e+01
## 9: -3.88757324 -5.877928e+01
## 10: -3.70000000 -5.065300e+01
## 11: -3.55000000 -4.473887e+01
## 12: -3.40000000 -3.930400e+01
## 13: -3.25000000 -3.432812e+01
## 14: -3.10000000 -2.979100e+01
## 15: -2.95000000 -2.567237e+01
## 16: -2.80000000 -2.195200e+01
## 17: -2.63757324 -1.836627e+01
## 18: -2.45000000 -1.470612e+01
## 19: -2.30000000 -1.216700e+01
## 20: -2.15000000 -9.938375e+00
## 21: -2.00000000 -8.000000e+00
## 22: -1.85000000 -6.331625e+00
## 23: -1.70000000 -4.913000e+00
## 24: -1.55000000 -3.723875e+00
## 25: -1.38757324 -2.680499e+00
## 26: -1.20000000 -1.728000e+00
## 27: -1.05000000 -1.157625e+00
## 28: -0.90000000 -7.290000e-01
## 29: -0.75000000 -4.218750e-01
## 30: -0.60000000 -2.160000e-01
## 31: -0.45000000 -9.112500e-02
## 32: -0.30000000 -2.700000e-02
## 33: -0.13757324 -3.441162e-03
## 34: -0.04378662 -2.507324e-04
## 35: 0.05000000 1.250000e-04
## 36: 0.20000000 8.000000e-03
## 37: 0.35000000 4.287500e-02
## 38: 0.50000000 1.250000e-01
## 39: 0.65000000 2.746250e-01
## 40: 0.80000000 5.120000e-01
## 41: 0.95000000 8.573750e-01
## 42: 1.11242676 1.383665e+00
## 43: 1.30000000 2.197000e+00
## 44: 1.45000000 3.048625e+00
## 45: 1.60000000 4.096000e+00
## 46: 1.75000000 5.359375e+00
## 47: 1.90000000 6.859000e+00
## 48: 2.05000000 8.615125e+00
## 49: 2.20000000 1.064800e+01
## 50: 2.36242676 1.319950e+01
## 51: 2.55000000 1.658138e+01
## 52: 2.70000000 1.968300e+01
## 53: 2.85000000 2.314913e+01
## 54: 3.00000000 2.700000e+01
## 55: 3.15000000 3.125588e+01
## 56: 3.30000000 3.593700e+01
## 57: 3.45000000 4.106363e+01
## 58: 3.61242676 4.716501e+01
## 59: 3.80000000 5.487200e+01
## 60: 3.95000000 6.162988e+01
## 61: 4.10000000 6.892100e+01
## 62: 4.26242676 7.746828e+01
## 63: 4.45000000 8.812113e+01
## 64: 4.60000000 9.733600e+01
## 65: 4.75000000 1.071719e+02
## 66: 4.91242676 1.185764e+02
## 67: 5.00000000 1.250000e+02
## x y
##
## $Fitted.xy
## x y y.hat NNS.ID gradient residuals standard.errors
## 1: -5.00 -125.0000 -125.0000 q1111111 74.25250 0.00000000 0.00000000
## 2: -4.95 -121.2874 -121.2874 q1111111 71.30250 0.00000000 0.07312511
## 3: -4.90 -117.6490 -117.7223 q1111112 71.30250 0.07325000 0.07312511
## 4: -4.85 -114.0841 -114.1571 q1111121 71.30250 0.07300000 0.07312511
## 5: -4.80 -110.5920 -110.5920 q1111121 66.98250 0.00000000 0.07087511
## ---
## 197: 4.80 110.5920 110.6826 q2222212 70.21353 -0.09055174 0.08778340
## 198: 4.85 114.0841 114.1932 q2222221 70.21353 -0.10910349 0.08778340
## 199: 4.90 117.6490 117.7039 q2222221 70.21353 -0.05490523 0.08778340
## 200: 4.95 121.2874 121.3325 q2222222 73.35081 -0.04508454 0.04508454
## 201: 5.00 125.0000 125.0000 q2222222 73.35081 0.00000000 0.04508454
Multivariate regressions return a plot of \(y\) and \(\hat{y}\), as well as the regression points
($RPM
) and partitions ($rhs.partitions
) for
each regressor.
f = function(x, y) x ^ 3 + 3 * y - y ^ 3 - 3 * x
y = x ; z <- expand.grid(x, y)
g = f(z[ , 1], z[ , 2])
NNS.reg(z, g, order = "max", plot = FALSE, ncores = 1)
## $R2
## [1] 1
##
## $rhs.partitions
## Var1 Var2
## 1: -5.00 -5
## 2: -4.95 -5
## 3: -4.90 -5
## 4: -4.85 -5
## 5: -4.80 -5
## ---
## 40397: 4.80 5
## 40398: 4.85 5
## 40399: 4.90 5
## 40400: 4.95 5
## 40401: 5.00 5
##
## $RPM
## Var1 Var2 y.hat
## 1: -4.8 -4.80 -7.105427e-15
## 2: -4.8 -2.55 -8.726063e+01
## 3: -4.8 -2.50 -8.806700e+01
## 4: -4.8 -2.45 -8.883587e+01
## 5: -4.8 -2.40 -8.956800e+01
## ---
## 40397: -2.6 -2.80 3.776000e+00
## 40398: -2.6 -2.75 2.770875e+00
## 40399: -2.6 -2.70 1.807000e+00
## 40400: -2.6 -2.65 8.836250e-01
## 40401: -2.6 -2.60 1.776357e-15
##
## $Point.est
## NULL
##
## $pred.int
## NULL
##
## $Fitted.xy
## Var1 Var2 y y.hat NNS.ID residuals
## 1: -5.00 -5 0.000000 0.000000 201.201 0
## 2: -4.95 -5 3.562625 3.562625 402.201 0
## 3: -4.90 -5 7.051000 7.051000 603.201 0
## 4: -4.85 -5 10.465875 10.465875 804.201 0
## 5: -4.80 -5 13.808000 13.808000 1005.201 0
## ---
## 40397: 4.80 5 -13.808000 -13.808000 39597.40401 0
## 40398: 4.85 5 -10.465875 -10.465875 39798.40401 0
## 40399: 4.90 5 -7.051000 -7.051000 39999.40401 0
## 40400: 4.95 5 -3.562625 -3.562625 40200.40401 0
## 40401: 5.00 5 0.000000 0.000000 40401.40401 0
NNS.reg
can inter- or extrapolate any point of interest.
The NNS.reg(x, y, point.est = ...)
parameter permits any sized data of similar dimensions to \(x\) and called specifically with
NNS.reg(...)$Point.est
.
NNS.reg
also provides a dimension
reduction regression by including a parameter
NNS.reg(x, y, dim.red.method = "cor", ...)
.
Reducing all regressors to a single dimension using the returned
equation
NNS.reg(..., dim.red.method = "cor", ...)$equation
.
NNS.reg(iris[ , 1 : 4], iris[ , 5], dim.red.method = "cor", location = "topleft", ncores = 1)$equation
## Variable Coefficient
## 1: Sepal.Length 0.7980781
## 2: Sepal.Width -0.4402896
## 3: Petal.Length 0.9354305
## 4: Petal.Width 0.9381792
## 5: DENOMINATOR 4.0000000
Thus, our model for this regression would be: \[Species = \frac{0.798*Sepal.Length -0.44*Sepal.Width +0.935*Petal.Length +0.938*Petal.Width}{4} \]
NNS.reg(x, y, dim.red.method = "cor", threshold = ...)
offers a method of reducing regressors further by controlling the
absolute value of required correlation.
NNS.reg(iris[ , 1 : 4], iris[ , 5], dim.red.method = "cor", threshold = .75, location = "topleft", ncores = 1)$equation
## Variable Coefficient
## 1: Sepal.Length 0.7980781
## 2: Sepal.Width 0.0000000
## 3: Petal.Length 0.9354305
## 4: Petal.Width 0.9381792
## 5: DENOMINATOR 3.0000000
Thus, our model for this further reduced dimension regression would be: \[Species = \frac{\: 0.798*Sepal.Length + 0*Sepal.Width +0.935*Petal.Length +0.938*Petal.Width}{3} \]
and the point.est = (...)
operates in the same manner as
the full regression above, again called with
NNS.reg(...)$Point.est
.
NNS.reg(iris[ , 1 : 4], iris[ , 5], dim.red.method = "cor", threshold = .75, point.est = iris[1 : 10, 1 : 4], location = "topleft", ncores = 1)$Point.est
## [1] 1 1 1 1 1 1 1 1 1 1
For a classification problem, we simply set
NNS.reg(x, y, type = "CLASS", ...)
.
NOTE: Base category of response variable should be 1, not 0 for classification problems.
NNS.reg(iris[ , 1 : 4], iris[ , 5], type = "CLASS", point.est = iris[1 : 10, 1 : 4], location = "topleft", ncores = 1)$Point.est
## [1] 1 1 1 1 1 1 1 1 1 1
NNS.stack()
The NNS.stack
routine cross-validates
for a given objective function the n.best
parameter in the
multivariate NNS.reg
function as well as
the threshold
parameter in the dimension reduction
NNS.reg
version.
NNS.stack
can be used for
classification:
NNS.stack(..., type = "CLASS", ...)
or continuous dependent variables:
NNS.stack(..., type = NULL, ...)
.
Any objective function obj.fn
can be called using
expression()
with the terms predicted
and
actual
, even from external packages such as
Metrics
.
NNS.stack(..., obj.fn = expression(Metrics::mape(actual, predicted)), objective = "min")
.
NNS.stack(IVs.train = iris[ , 1 : 4],
DV.train = iris[ , 5],
IVs.test = iris[1 : 10, 1 : 4],
dim.red.method = "cor",
obj.fn = expression( mean(round(predicted) == actual) ),
objective = "max", type = "CLASS",
folds = 1, ncores = 1)
Folds Remaining = 0
Current NNS.reg(... , threshold = 0.935 ) MAX Iterations Remaining = 2
Current NNS.reg(... , threshold = 0.795 ) MAX Iterations Remaining = 1
Current NNS.reg(... , threshold = 0.44 ) MAX Iterations Remaining = 0
Current NNS.reg(... , n.best = 1 ) MAX Iterations Remaining = 12
Current NNS.reg(... , n.best = 2 ) MAX Iterations Remaining = 11
Current NNS.reg(... , n.best = 3 ) MAX Iterations Remaining = 10
Current NNS.reg(... , n.best = 4 ) MAX Iterations Remaining = 9
$OBJfn.reg
[1] 1
$NNS.reg.n.best
[1] 4
$probability.threshold
[1] 0.43875
$OBJfn.dim.red
[1] 0.9666667
$NNS.dim.red.threshold
[1] 0.935
$reg
[1] 1 1 1 1 1 1 1 1 1 1
$reg.pred.int
NULL
$dim.red
[1] 1 1 1 1 1 1 1 1 1 1
$dim.red.pred.int
NULL
$stack
[1] 1 1 1 1 1 1 1 1 1 1
$pred.int
NULL
Given multicollinearity is not an issue for nonparametric regressions
as it is for OLS, in the case of an ill-fit univariate model a better
option may be to increase the dimensionality of regressors with a copy
of itself and cross-validate the number of clusters n.best
via:
NNS.stack(IVs.train = cbind(x, x), DV.train = y, method = 1, ...)
.
set.seed(123)
x = rnorm(100); y = rnorm(100)
nns.params = NNS.stack(IVs.train = cbind(x, x),
DV.train = y,
method = 1, ncores = 1)
NNS.reg(cbind(x, x), y,
n.best = nns.params$NNS.reg.n.best,
point.est = cbind(x, x),
residual.plot = TRUE,
ncores = 1, confidence.interval = .95)
If the user is so motivated, detailed arguments further examples are provided within the following:
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.