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NOVA 0.1.1

CRAN Resubmission Fixes

• Removed all commented code from examples and function bodies
• Fixed DESCRIPTION to spell out Multi-Electrode Array (MEA) without quotes
• Added newlines at end of all R source files
• Fixed parse errors in documentation examples

Initial CRAN Release

This is the first release of NOVA (Neuroactivity Omics Visualization and Analysis), a comprehensive toolkit for analyzing and visualizing Multi-Electrode Array (MEA) data.

Main Features

• Data Processing: Flexible MEA data processing with automatic structure discovery
  • discover_mea_structure(): Automatically detects data structure
  • process_mea_flexible(): Processes MEA data with quality filtering options
  • handle_missing_values(): Multiple strategies for handling missing data
• Principal Component Analysis:
  • pca_analysis_enhanced(): Comprehensive PCA with visualization
  • analyze_pca_variable_importance_general(): Variable importance analysis
  • plot_pca_trajectories_general(): Trajectory visualization across conditions
• Heatmap Visualization:
  • create_mea_heatmaps_enhanced(): Publication-ready heatmaps with multiple scaling options
  • Support for hierarchical clustering and custom annotations
• Utility Functions: Helper functions for data manipulation, scaling, and color schemes

Documentation

• Comprehensive function documentation with examples
• Vignettes demonstrating typical workflows
• Support for various MEA data formats

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.