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NPflow
NPflow is a package for performing Bayesian
estimation of Dirichlet process mixtures of multivariate skew \(t\)-distributions. It is
especially oriented towards flow-cytometry data preprocessing
applications, but can be useful for numerous other applications.
The main function of the package is DPMpost().
The method implemented in this package is detailed in the following article:
Hejblum BP, Alkhassim C, Gottardo R, Caron F and Thiebaut R (2019). Sequential Dirichlet Process Mixtures of Multivariate Skew t-distributions for Model-based Clustering of Flow Cytometry Data. The Annals of Applied Statistics, 13(1):638-660. <doi: 10.1214/18-AOAS1209> <arXiv: 1702.04407>
The easiest way to get NPflow is to install it from CRAN:
install.packages("NPflow")Or to get the development version from GitHub:
#install.packages("devtools")
devtools::install_github("sistm/NPflow", ref="CRANrelease")– Boris Hejblum
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.