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Removed C wrapper functions and registered entry points for the
routines accessed by the .Fortran interface to call Fortran
subroutines.
Added a ‘NEWS.md’ file.
Added JSS registration information to the
‘DESCRIPTION’ file and the help page references.
Added a ‘CITATION’ file.
Fixed LTO (Link-Time Optimization) problems reported in CRAN package check results.
Changed the specification of boot.mple(), i.e., by
setting of random seed reproduction was enabled.
Added new argument trace = FALSE to
boot.mple() to enable/disable progress bar.
Removed Simulatexxxxx(),
Estimatexxxxx() and Palmxxxxx() functions, and
replaced them with the main functions sim.cppm(),
mple.cppm() and palm.mple() with
model argument for simulation, MPLEs (the maximum Palm
likelihood estimates), nonparametric and parametric estimation of Palm
intensity.
Added a new function boot.mple() to perform the
bootstrap by repeatedly simulating and fitting point patterns under the
fitted model.
Added S3 methods plot(), coef() and
summary() for returned class objects.
Added AIC calculations to evaluate models in the
mple.cppm() function.
Added defaults for initial values of
mple.cppm().
Revised the guide so that it can be referenced in
vignette("NScluster").
Changed the implementation of the random number generator to Mersenne-Twister.
Changed the names of simplex functions to
EstimateIP(), EstimateThomas(),
EstimateTypeA(), EstimateTypeB() and
EstimateTypeC().
Changed the range of x and y labels in the output plots of the
Estimatexxxxx() functions.
Removed ty arguments from PalmIP(),
PalmThomas(), PalmTypeA(),
PalmTypeB() and PalmTypeC(). Fixed
ty = 1 in R programs.
Renamed arguments x2 to uplimit = 0.3
of functions EstimateIP(), EstimateTypeA(),
PalmIP() and PalmTypeA().
Renamed arguments offspring to data of
Estimate functions and Palm functions.
Added default values 0.001 for delta of
Palm functions.
Instead of removing the pa argument of the Palm
function, the vector of true parameters par1 = NULL and the
vector of MPLEs par2 = NULL have been added.
Added new arguments parents.distinct = FALSE to
SimulateTypeB() and SimulateTypeC() to
distinguish between two groups of plotted points.
Added ’src/init.c’.
Merged NSclusterOMP package (parallel versions of parameter estimation by the simplex method) into NScluster package.
Fixed Fortran code according to the warning message when using
gfortran with -Wall -pedantic.
Fixed Simplex-IPfp.f, Simplex-TypeAfp.f, Plam-IPf.f and Palm-TypeAf.f for error handling.
Corrected True value to Initial value
in the expression of simplex function outputs.
Removed MPLE : simplex and normalized
outputs from simplex functions.
Added legends to plots of simplex functions.
Corrected PKG_LIBS in
‘NScluster/src/Makevars’ to
$(SHLIB_OPENMP_CFLAGS). (Reported by Brian
Ripley.)
Removed the setOmpNumThread() function.
Corrected ‘inst/doc/index.html’ according to the
error message for the W3C Markup Validation Service.
Reduced example in SimplexThomas() to less than 5
sec.
inst/LICENCE’ and added
‘inst/OUTHORS’.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.