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The separate p-values of SNPs, RNA expressions and DNA methylations are calculated by KM regression. The correlation between different omics data are taken into account. This method can be applied to either samples with all three types of omics data or samples with two types.
| Version: | 1.0 |
| Depends: | CompQuadForm, stringr |
| Imports: | survey |
| Published: | 2018-12-19 |
| DOI: | 10.32614/CRAN.package.OmnibusFisher |
| Author: | Qi Yan |
| Maintainer: | Qi Yan <qiy17 at pitt.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | OmnibusFisher results |
| Reference manual: | OmnibusFisher.pdf |
| Package source: | OmnibusFisher_1.0.tar.gz |
| Windows binaries: | r-devel: OmnibusFisher_1.0.zip, r-release: OmnibusFisher_1.0.zip, r-oldrel: OmnibusFisher_1.0.zip |
| macOS binaries: | r-release (arm64): OmnibusFisher_1.0.tgz, r-oldrel (arm64): OmnibusFisher_1.0.tgz, r-release (x86_64): OmnibusFisher_1.0.tgz, r-oldrel (x86_64): OmnibusFisher_1.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.