The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
An efficient tool designed for differential analysis of large-scale RNA sequencing (RNAseq) data and Bisulfite sequencing (BSseq) data in the presence of individual relatedness and population structure. 'PQLseq' first fits a Generalized Linear Mixed Model (GLMM) with adjusted covariates, predictor of interest and random effects to account for population structure and individual relatedness, and then performs Wald tests for each gene in RNAseq or site in BSseq.
| Version: | 1.2.1 |
| Depends: | R (≥ 2.10) |
| Imports: | Rcpp (≥ 0.12.14), foreach, doParallel, parallel, Matrix, methods |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2021-06-06 |
| DOI: | 10.32614/CRAN.package.PQLseq |
| Author: | Shiquan Sun, Jiaqiang Zhu, Xiang Zhou |
| Maintainer: | Jiaqiang Zhu <jiaqiang at umich.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | see file COPYRIGHTS |
| NeedsCompilation: | yes |
| In views: | Omics |
| CRAN checks: | PQLseq results |
| Reference manual: | PQLseq.pdf |
| Package source: | PQLseq_1.2.1.tar.gz |
| Windows binaries: | r-devel: PQLseq_1.2.1.zip, r-release: PQLseq_1.2.1.zip, r-oldrel: PQLseq_1.2.1.zip |
| macOS binaries: | r-release (arm64): PQLseq_1.2.1.tgz, r-oldrel (arm64): PQLseq_1.2.1.tgz, r-release (x86_64): PQLseq_1.2.1.tgz, r-oldrel (x86_64): PQLseq_1.2.1.tgz |
| Old sources: | PQLseq archive |
Please use the canonical form https://CRAN.R-project.org/package=PQLseq to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.