The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Jointly segment several ChIP-seq samples to find the peaks which are the same and different across samples. The fast approximate maximum Poisson likelihood algorithm is described in "PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples" <doi:10.48550/arXiv.1506.01286> by TD Hocking and G Bourque.
| Version: | 2024.10.1 |
| Depends: | R (≥ 2.14) |
| Imports: | PeakError, parallel, penaltyLearning |
| Suggests: | testthat, ggplot2 (≥ 2.0), microbenchmark |
| Published: | 2024-10-02 |
| DOI: | 10.32614/CRAN.package.PeakSegJoint |
| Author: | Toby Dylan Hocking [aut, cre] |
| Maintainer: | Toby Dylan Hocking <toby.hocking at r-project.org> |
| BugReports: | https://github.com/tdhock/PeakSegJoint/issues |
| License: | GPL-3 |
| URL: | https://github.com/tdhock/PeakSegJoint |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | PeakSegJoint results |
| Reference manual: | PeakSegJoint.pdf |
| Package source: | PeakSegJoint_2024.10.1.tar.gz |
| Windows binaries: | r-devel: PeakSegJoint_2024.10.1.zip, r-release: PeakSegJoint_2024.10.1.zip, r-oldrel: PeakSegJoint_2024.10.1.zip |
| macOS binaries: | r-release (arm64): PeakSegJoint_2024.10.1.tgz, r-oldrel (arm64): PeakSegJoint_2024.10.1.tgz, r-release (x86_64): PeakSegJoint_2024.10.1.tgz, r-oldrel (x86_64): PeakSegJoint_2024.10.1.tgz |
| Old sources: | PeakSegJoint archive |
Please use the canonical form https://CRAN.R-project.org/package=PeakSegJoint to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.