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Screens and sorts phylogenetic trees in both traditional and extended Newick format. Allows for the fast and flexible screening (within a tree) of Exclusive clades that comprise only the target taxa and/or Non- Exclusive clades that includes a defined portion of non-target taxa.
| Version: | 1.0.8 |
| Depends: | R (≥ 3.0.0) |
| Imports: | phytools, ape |
| Published: | 2018-08-06 |
| DOI: | 10.32614/CRAN.package.PhySortR |
| Author: | Timothy Stephens [aut, cre, trl] (R port), Debashish Bhattacharya [aut], Mark Ragan [aut], Cheong Xin Chan [aut, cph] (Original Perl implementation) |
| Maintainer: | Timothy Stephens <timothy.stephens1 at uqconnect.edu.au> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| CRAN checks: | PhySortR results |
| Reference manual: | PhySortR.pdf |
| Package source: | PhySortR_1.0.8.tar.gz |
| Windows binaries: | r-devel: PhySortR_1.0.8.zip, r-release: PhySortR_1.0.8.zip, r-oldrel: PhySortR_1.0.8.zip |
| macOS binaries: | r-release (arm64): PhySortR_1.0.8.tgz, r-oldrel (arm64): PhySortR_1.0.8.tgz, r-release (x86_64): PhySortR_1.0.8.tgz, r-oldrel (x86_64): PhySortR_1.0.8.tgz |
| Old sources: | PhySortR archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.