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QuartetStates()
handles absent leaves gracefully.TreeTools::in.Splits()
.CompareQuartetsMulti()
compares quartet status in one tree with status in multiple others.VisualizeQuartets()
depicts contribution of splits to quartet score.SimilarityToReference()
allows comparison against specified reference topology.RobinsonFoulds()
: renamed to RawSymmetricDifference()
.QuartetState[s]()
now uses sister-of-4 notation, rather than sister-of-1, to give values within [0, 3].ManyToManyQuartetAgreement()
now returns entries for N
and Q
.AllQuartets()
and QuartetStates()
.QuartetStatus()
now supports non-identical leaf samples.SimilarityMetrics()
now handles single tree comparisons.PlotQuartet()
.TreeTools
in place of TreeSearch
, supporting new Splits
class.ptr_fun
.sq_trees
, to illustrate issues with partition-based distance metrics.github_install
.SimilarityMetrics
now takes the output of QuartetStatus(trees)
, rather than a list of trees.SplitStatus
now returns output using the same column headers as QuartetStatus
N
added to QuartetStatus
output.QuartetMetrics
→ SimilarityMetrics
MatchingSplits
→ SplitStatus
MatchingQuartets
→ QuartetStatus
Choices
→ AllQuartets
MatchingSplits
function to calculate number of splits contradicted / unresolved.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.