NEWS	R Documentation

R2admb News

Changes in version 0.7.16.3 (2022-11-07)

• Fix vignette breakage from ggplot update (to 3.4.0)

Changes in version 0.7.16.2 (2020-03-09)

• Fix vignette breakage from ggplot update

Changes in version 0.7.16 (2017-10-29

• handle non-standard report files better; add flag to ignore them (i.e. not warn) if requested

• internal cleanup

Changes in version 0.7.15 (2016-12-06

• add covfn argument to read_params, warn if multiple .std files found (Koen van Benthem)

• small CRAN compatibility fixes

Changes in version 0.7.14 (2015-7-20

• truncate profile files to 8 characters (Edgar Gonzalez)

• CRAN tweaks

Changes in version 0.7.13 (2015-4-12

• CRAN tweaks

Changes in version 0.7.12 (2015-4-11

• add default location for MacOS ( Fernando Cagua )

• various R CMD check/roxygenize updates

• CRAN tweaks: package title in Title Case

• admb_home goes at beginning of path on Unix

Changes in version 0.7.11 (2014-5-01

• update vignette, documentation tweaks

Changes in version 0.7.10 (2013-9-22

• test tweaks

Changes in version 0.7.9 (2013-9-21

• CRAN tweaks

• admb_version now returns NA if ADMB not found

Changes in version 0.7.8 (2013-9-20

• bug fix for AIC

• improvements to read_pars

• allow all-numeric report file

• bug fix for parameter section containing only LOCAL_CALCS

Changes in version 0.7.7 (2013-2-20

• allow multiple LOC_CALCS blocks per section

• improved handling of variable types (fixed, random, extra) in accessors (coef, confint, stdEr)

• phase support

• add AIC to summary printing method

• read_plt() (likelihood profile info) now user-visible

• warn on missing cor file

• add admb_version()

• fix buglets with MCMC reading

• fix bug to allow re to be specified within parameter lists

• more flexibility in extracting coefficients, var-cov elements

Changes in version 0.7.6 (2012-11-06)

• Development migration to github

• Add Jeff Laake to authors

• Improved reading of hessian, vcov matrix

Changes in version 0.7.5.3

• ignore !! *after* beginning of line in variable definitions

• fix mcmc2 bug

Changes in version 0.7.5.2

• fix Windows bug in run_admb

Changes in version 0.7.5.1

• export dat_write, add append option, doc tweaks

• structure cleanup

Changes in version 0.7.5

• remove ggplot2 dependency (removed 'ggplot' option from plot.admb.hist) [to reduce dependency creep in glmmADMB]

• allow for negative-phase in read_par

Changes in version 0.7.4

• major changes to modularity: exposed compile_admb, run_admb, read_admb

• changes to clean_admb

• improved logic for retrieving profile and MCMC parameter names in read_admb; run_admb writes .mcinfo file to disk

• write_dat complains if class is not matrix or factor

• exposed confint.admb

• read_pars reads full std matrix (attempt at back-compatibility) [and fixed bug]

• fixed bug: std err/estimate names mismatch

Changes in version 0.7.2

• exposed and documented read_pars, write_pin, write_dat

Changes in version 0.7.1 (2010-08-16)

• improved warning handling

• took out testing for spurious xxalloc error messages

• added ignore_admb_errors

Changes in version 0.7

• uncertain: more accessors, general cleanup

Changes in version 0.6 (2010-08-16)

• Support for MCMC

• Support for profiling

• Support for random effects

• Expanded vignette

• PARAMETERS and DATA section can be created automatically

Changes in version 0.5 (2009-11-25)

• Initial release. Basic stuff works on my system, lightly tested elsewhere.