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Rename RGCCA classes and prefix them with “rgcca_”.
Merge documentation of print functions.
Merge documentation of plot functions.
Environment variable TEST_SNAPSHOTS must be set to “TRUE” for snapshots to be evaluated.
NEWS.md file to track changes to the package.Many differences have been introduced since the last version published on CRAN. We list below the most important ones: * The function rgcca is now the main entry point of the package. * Many well-known methods of the multiblock literature are now directly available by setting the method argument in the rgcca function. The list of methods can be found using the available_methods function. * Arguments A and C of the rgcca function are now deprecated. blocks and connection should be used instead. * Small utility functions are no longer exported. * Functions rgcca_transform and rgcca_predict have been added. They allow applying fitted RGCCA models to project new subjects onto the learned subspaces and make predictions of response blocks using caret predictive models. * Functions rgcca_cv and rgcca_permutation have been added. They allow for finding the best parameters of the models based on a cross-validation or permutation criterion. * The function rgcca_bootstrap has been added to evaluate the weights of a model using a bootstrap procedure. * The function rgcca_stability has been added to evaluate the stability of the variable selection performed by SGCCA. * Print and plot functions have been added for the outputs of functions rgcca, rgcca_cv, rgcca_permutation, rgcca_bootstrap, and rgcca_stability.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.