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Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) <doi:10.1371/journal.pbio.1000493>, Morlon et al. (2011) <doi:10.1073/pnas.1102543108>, Condamine et al. (2013) <doi:10.1111/ele.12062>, Morlon et al. (2014) <doi:10.1111/ele.12251>, Manceau et al. (2015) <doi:10.1111/ele.12415>, Lewitus & Morlon (2016) <doi:10.1093/sysbio/syv116>, Drury et al. (2016) <doi:10.1093/sysbio/syw020>, Manceau et al. (2016) <doi:10.1093/sysbio/syw115>, Morlon et al. (2016) <doi:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <doi:10.1073/pnas.1606868114>, Drury et al. (2017) <doi:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <doi:10.1093/sysbio/syx095>, Drury et al. (2018) <doi:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <doi:10.1093/sysbio/syy045>, Maliet et al. (2019) <doi:10.1038/s41559-019-0908-0>, Billaud et al. (2019) <doi:10.1093/sysbio/syz057>, Lewitus et al. (2019) <doi:10.1093/sysbio/syz061>, Aristide & Morlon (2019) <doi:10.1111/ele.13385>, Maliet et al. (2020) <doi:10.1111/ele.13592>, Drury et al. (2021) <doi:10.1371/journal.pbio.3001270>, Perez-Lamarque & Morlon (2022) <doi:10.1111/mec.16478>, Perez-Lamarque et al. (2022) <doi:10.1101/2021.08.30.458192>, Mazet et al. (2023) <doi:10.1111/2041-210X.14195>, Drury et al. (2024) <doi:10.1016/j.cub.2023.12.055>.
| Version: | 2.3 |
| Depends: | R (≥ 3.5.0), ape, picante, methods |
| Imports: | BB, bipartite, cluster, coda, deSolve, fields, fpc, geiger, glassoFast, graphics, grDevices, igraph, Matrix, mvtnorm, mvMORPH (≥ 1.1.6), GUniFrac, parallel, ParallelLogger, phangorn, phytools, pracma, pspline, pvclust, raster, RColorBrewer, R.utils, Rmpfr, stats, TESS, utils, vegan |
| Suggests: | testthat |
| Published: | 2024-02-21 |
| DOI: | 10.32614/CRAN.package.RPANDA |
| Author: | Hélène Morlon [aut, cre, cph], Eric Lewitus [aut, cph], Fabien Condamine [aut, cph], Marc Manceau [aut, cph], Julien Clavel [aut, cph], Jonathan Drury [aut, cph], Olivier Billaud [aut, cph], Odile Maliet [aut, cph], Leandro Aristide [aut, cph], Benoit Perez-Lamarque [aut, cph], Nathan Mazet [aut, cph] |
| Maintainer: | Hélène Morlon <helene.morlon at bio.ens.psl.eu> |
| License: | GPL-2 |
| URL: | https://github.com/hmorlon/PANDA |
| NeedsCompilation: | yes |
| Citation: | RPANDA citation info |
| Materials: | README |
| In views: | Phylogenetics |
| CRAN checks: | RPANDA results [issues need fixing before 2024-11-24] |
| Reference manual: | RPANDA.pdf |
| Package source: | RPANDA_2.3.tar.gz |
| Windows binaries: | r-devel: RPANDA_2.3.zip, r-release: RPANDA_2.3.zip, r-oldrel: RPANDA_2.3.zip |
| macOS binaries: | r-release (arm64): RPANDA_2.3.tgz, r-oldrel (arm64): RPANDA_2.3.tgz, r-release (x86_64): RPANDA_2.3.tgz, r-oldrel (x86_64): RPANDA_2.3.tgz |
| Old sources: | RPANDA archive |
| Reverse suggests: | nodeSub, treestats |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.