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RareComb: Combinatorial and Statistical Analyses of Rare Events

A custom implementation of the apriori algorithm and binomial tests to identify combinations of features (genes, variants etc) significantly enriched for simultaneous mutations/events from sparse Boolean input, see Vijay Kumar Pounraja, Santhosh Girirajan (2021). Version 1.1 includes a minor adjustment to the number of combinations to be considered for multiple testing correction. This updated version is more conservative in its approach and hence more selective. <doi:10.1101/2021.10.01.462832>.

Version: 1.1
Depends: R (≥ 2.10)
Imports: magrittr, arules, dplyr, methods, pwr, stringr, tidyr, reshape2, sqldf
Published: 2022-02-24
DOI: 10.32614/CRAN.package.RareComb
Author: Vijay Kumar Pounraja ORCID iD [aut, cre]
Maintainer: Vijay Kumar Pounraja <vijaykumar.mp at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: RareComb results

Documentation:

Reference manual: RareComb.pdf

Downloads:

Package source: RareComb_1.1.tar.gz
Windows binaries: r-devel: RareComb_1.1.zip, r-release: RareComb_1.1.zip, r-oldrel: RareComb_1.1.zip
macOS binaries: r-release (arm64): RareComb_1.1.tgz, r-oldrel (arm64): RareComb_1.1.tgz, r-release (x86_64): RareComb_1.1.tgz, r-oldrel (x86_64): RareComb_1.1.tgz
Old sources: RareComb archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.