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Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API <https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>.
| Version: | 0.1.2-0.1.4 |
| Depends: | R (≥ 4.4.0) |
| Imports: | DBI, duckdb, utils |
| Suggests: | tinytest |
| Published: | 2026-02-23 |
| DOI: | 10.32614/CRAN.package.Rduckhts (may not be active yet) |
| Author: | Sounkou Mahamane Toure [aut, cre], James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan, Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] (Htslib Authors), DuckDB C Extension API Authors [ctb] |
| Maintainer: | Sounkou Mahamane Toure <sounkoutoure at gmail.com> |
| BugReports: | https://github.com/RGenomicsETL/duckhts/issues |
| License: | GPL-3 |
| Copyright: | See inst/COPYRIGHT |
| URL: | https://github.com/RGenomicsETL/duckhts |
| NeedsCompilation: | no |
| SystemRequirements: | GNU make, cmake, zlib, libbz2, liblzma, libcurl, openssl (development headers) |
| Materials: | NEWS |
| CRAN checks: | Rduckhts results |
| Reference manual: | Rduckhts.html , Rduckhts.pdf |
| Package source: | Rduckhts_0.1.2-0.1.4.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
Please use the canonical form https://CRAN.R-project.org/package=Rduckhts to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.