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SAVER (Single-cell Analysis Via Expression Recovery) implements a regularized regression prediction and empirical Bayes method to recover the true gene expression profile in noisy and sparse single-cell RNA-seq data.
You can install SAVER from CRAN by running:
install.packages("SAVER")
library(SAVER)You can also install the most recent updates of SAVER from github with:
# install.packages("devtools")
devtools::install_github("mohuangx/SAVER")For more information about the method, check out the website, tutorial, and paper.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.