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SIMPLICA: Biclustering via Simplivariate Component Analysis

Identifies constant, additive, multiplicative, and user-defined simplivariate components in numeric data matrices using a genetic algorithm. Supports flexible pattern definitions and provides visualization for general biclustering applications across diverse domains. The method builds on simplivariate models as introduced in Hageman et al. (2008) <doi:10.1371/journal.pone.0003259> and is related to biclustering frameworks as reviewed by Madeira and Oliveira (2004) <doi:10.1109/TCBB.2004.2>.

Version: 1.0.0
Depends: R (≥ 2.10)
Imports: GA, ggplot2, ggsci
Published: 2025-09-03
DOI: 10.32614/CRAN.package.SIMPLICA
Author: Jos Hageman [aut, cre]
Maintainer: Jos Hageman <jos.hageman at wur.nl>
BugReports: https://github.com/joshageman/SIMPLICA/issues
License: GPL-3
URL: https://github.com/joshageman/SIMPLICA
NeedsCompilation: no
CRAN checks: SIMPLICA results

Documentation:

Reference manual: SIMPLICA.html , SIMPLICA.pdf

Downloads:

Package source: SIMPLICA_1.0.0.tar.gz
Windows binaries: r-devel: SIMPLICA_1.0.0.zip, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): SIMPLICA_1.0.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): SIMPLICA_1.0.0.tgz, r-oldrel (x86_64): SIMPLICA_1.0.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SIMPLICA to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.