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This update introduces new functionality for the tumor growth simulator.
New functionality:
simulateTumor() has been added. This
allows the user to specify a custom disease model for more control over
the kinds of mutations that can occur. See vignette for more
details.bulkSample() and
randomBulkSamples() to better simulate real sequencing
data.Changes to existing functionality:
alleles data frame which was returned by
simulateTumor() has been renamed to genotypes
to be biologically correct.Bug fixes:
visualizeTumor, there was an issue where suggested
package rgl was not being used conditionally.Internal changes:
C++ code has been completely refactored for
organization.This patch contains bug fixes. In addition, the dependence on R 4.0.0 is switched to 3.6.0, so that users on the old release can use the package.
Bug fixes:
pow() in
“post_processing.h” causes a compilation error on Solaris.Initial submission to CRAN.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.