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SNPAssayR 1.0.1

• Initial release: offline CAPS, single-substitution site-creation dCAPS, conventional two-reaction ARMS and tetra-primer ARMS candidate design.
• Evaluate perfect-match primer thermodynamics, sequence compatibility and theoretical complete digests with explicit uncertainty and search limits.
• Provide source-linked coordinate and band schematics, within-method preference ranking, reproducible exports and an optional local Shiny interface.
• Apply tetra-primer product-size bounds to the control and both diagnostic products; retain separate broad pairwise risk screening.
• Include runnable public-API examples and regenerable computational references.
• Expand the source-verified enzyme panel to 20 distinct motifs, including MfeI-HF.
• Add an offline 550-bp synthetic teaching locus and practical-length workflows for CAPS, dCAPS, conventional ARMS and tetra-primer ARMS.
• Provide a version-specific software citation through citation(“SNPAssayR”).
• Record ICAR-Indian Institute of Rapeseed-Mustard Research (ICAR-IIRMR) as copyright holder while retaining the three authors and designated maintainer.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.